Commit 9c1a6f03 authored by Wai Yi Leung's avatar Wai Yi Leung

Change default settings to VALIDATED settings .

parent d5d6a13d
......@@ -64,22 +64,24 @@ class TinyCap(val root: Configurable) extends QScript
"bowtie" -> Map(
"chunkmbs" -> 256,
"seedmms" -> 3,
"seedlen" -> 25,
"k" -> 5,
"best" -> true
"seedlen" -> 28,
"k" -> 3,
"best" -> true,
"strata" -> true
),
"sickle" -> Map(
"lengthThreshold" -> 15
),
"fastqc" -> Map(
"sensitiveAdapterSearch" -> true
"sensitiveAdapterSearch" -> false
),
"cutadapt" -> Map(
"error_rate" -> 0.2,
"error_rate" -> 0.1,
"minimum_length" -> 15,
"q" -> 30,
"default_clip_mode" -> "both",
"times" -> 2
"default_clip_mode" -> "3",
"times" -> 1,
"ignore_fastqc_adapters" -> true
)
)
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment