Commit 936eabfb authored by Peter van 't Hof's avatar Peter van 't Hof

replace semi-solon

parent 5a7b30eb
......@@ -155,7 +155,9 @@ object GensToVcf extends ToolCommand {
.make()
}
val infoMap = infoHeaderKeys.map(_.map(x => ("GENS_" + x) -> infoValues.get(infoHeaderMap.get(x))).toMap).getOrElse(Map())
val infoMap = infoHeaderKeys
.map(_.map(x => ("GENS_" + x) -> infoValues.get(infoHeaderMap.get(x)).replaceAll(";", ",")).toMap)
.getOrElse(Map())
val builder = (new VariantContextBuilder)
.chr(cmdArgs.contig)
......
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