Commit 883abceb authored by Peter van 't Hof's avatar Peter van 't Hof

Adding getting started

parent 5c780aa9
# Developer - Getting started
### Requirements
- Maven 3.3
- Installed Gatk to maven local repository
- Installed Biopet to maven local repository
-
To start to develop a biopet pipeline you should have installed Gatk and Biopet in your local maven repository. Do to this execute the follow command.
```bash
# Replace 'mvn' for to location of you maven executable or make put it in your PATH
git clone https://github.com/broadgsa/gatk-protected
cd gatk-protected
git checkout 3.4
# This version is bound to a version of Biopet, Biopet 0.5.0 using Gatk 3.4
mvn clean install
cd ..
git clone https://github.com/biopet/biopet.git
cd biopet
git checkout 0.5.0
mvn -DskipTests=true clean install
```
......@@ -38,6 +38,7 @@ pages:
- 0.3.1: 'release_notes_0.3.1.md'
- 0.3.0: 'release_notes_0.3.0.md'
- Developer:
- 'developer/getting-started.md'
- 'developer/code-style.md'
#- ['developing/Setup.md', 'Developing', 'Setting up your local development environment']
#theme: readthedocs
......
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