Commit 7e69b265 authored by Peter van 't Hof's avatar Peter van 't Hof

Fixing compile errors

parent ddc06b36
...@@ -16,18 +16,17 @@ package nl.lumc.sasc.biopet.pipelines.gears ...@@ -16,18 +16,17 @@ package nl.lumc.sasc.biopet.pipelines.gears
import nl.lumc.sasc.biopet.core.summary.SummaryQScript import nl.lumc.sasc.biopet.core.summary.SummaryQScript
import nl.lumc.sasc.biopet.core.BiopetQScript.InputFile import nl.lumc.sasc.biopet.core.BiopetQScript.InputFile
import nl.lumc.sasc.biopet.core.{PipelineCommand, SampleLibraryTag} import nl.lumc.sasc.biopet.core.{ PipelineCommand, SampleLibraryTag }
import nl.lumc.sasc.biopet.extensions.{Gzip, Zcat} import nl.lumc.sasc.biopet.extensions.{ Gzip, Zcat }
import nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep import nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep
import nl.lumc.sasc.biopet.utils.Logging import nl.lumc.sasc.biopet.utils.Logging
import nl.lumc.sasc.biopet.utils.config.Configurable import nl.lumc.sasc.biopet.utils.config.Configurable
import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb
import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb.{SampleId, SampleName}
import org.broadinstitute.gatk.queue.QScript import org.broadinstitute.gatk.queue.QScript
import sun.security.provider.JavaKeyStore.DualFormatJKS
import scala.concurrent.Await import scala.concurrent.Await
import scala.concurrent.duration.Duration import scala.concurrent.duration.Duration
import scala.concurrent.ExecutionContext.Implicits.global
/** /**
* Created by wyleung * Created by wyleung
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