Commit 7be30c47 authored by Sander Bollen's avatar Sander Bollen

this is in vep_normalizer

parent 2c1fb614
...@@ -92,7 +92,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript with Sum ...@@ -92,7 +92,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript with Sum
} else inputVcf } else inputVcf
if (enableScatter) { if (enableScatter) {
val doNotRemove: Boolean = config("do_not_remove", namespace = "variant_effect_predictor", default = false) val doNotRemove: Boolean = config("do_not_remove", default = false)
if (doNotRemove) { if (doNotRemove) {
logger.warn("Chunking combined with do_not_remove possibly leads to mangled CSQ fields") logger.warn("Chunking combined with do_not_remove possibly leads to mangled CSQ fields")
} }
......
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