Commit 70dd869c authored by rhpvorderman's avatar rhpvorderman

Untangling of write summaryplotinprogress

parent ae8bf475
...@@ -20,7 +20,7 @@ ...@@ -20,7 +20,7 @@
<%@ var runId: Int %> <%@ var runId: Int %>
<%@ var allSamples: Seq[Sample] %> <%@ var allSamples: Seq[Sample] %>
<%@ var allLibraries: Seq[Library] %> <%@ var allLibraries: Seq[Library] %>
<%@ var alignmentSummaryPlotLines: Seq[String] %> <%@ var alignmentSummaryPlotLines: Option[Seq[String]] %>
<%@ var alignmentSummaryResults: Map[(Int, Int), Map[String, Option[Any]]] %> <%@ var alignmentSummaryResults: Map[(Int, Int), Map[String, Option[Any]]] %>
#{ #{
val samples = sampleId match { val samples = sampleId match {
...@@ -48,7 +48,7 @@ ...@@ -48,7 +48,7 @@
</div> </div>
#end #end
#if (showPlot) #if (showPlot)
#{ BammetricsReport.alignmentSummaryPlot(outputDir, "alignmentSummary", alignmentSummaryPlotLines, !sampleLevel) }# #{ BammetricsReport.alignmentSummaryPlot(outputDir, "alignmentSummary", alignmentSummaryPlotLines.getOrElse(Seq("")), !sampleLevel) }#
<div class="panel-body"> <div class="panel-body">
<img src="alignmentSummary.png" class="img-responsive" /> <img src="alignmentSummary.png" class="img-responsive" />
......
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