Commit 70dd869c authored by rhpvorderman's avatar rhpvorderman

Untangling of write summaryplotinprogress

parent ae8bf475
......@@ -20,7 +20,7 @@
<%@ var runId: Int %>
<%@ var allSamples: Seq[Sample] %>
<%@ var allLibraries: Seq[Library] %>
<%@ var alignmentSummaryPlotLines: Seq[String] %>
<%@ var alignmentSummaryPlotLines: Option[Seq[String]] %>
<%@ var alignmentSummaryResults: Map[(Int, Int), Map[String, Option[Any]]] %>
#{
val samples = sampleId match {
......@@ -48,7 +48,7 @@
</div>
#end
#if (showPlot)
#{ BammetricsReport.alignmentSummaryPlot(outputDir, "alignmentSummary", alignmentSummaryPlotLines, !sampleLevel) }#
#{ BammetricsReport.alignmentSummaryPlot(outputDir, "alignmentSummary", alignmentSummaryPlotLines.getOrElse(Seq("")), !sampleLevel) }#
<div class="panel-body">
<img src="alignmentSummary.png" class="img-responsive" />
......
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