Commit 63075e6f authored by Peter van 't Hof's avatar Peter van 't Hof

Added initial version of release notes

parent 736e0109
# Release notes Biopet version 0.6.0
## General Code changes
* Switch to full public licence
* Upgrade to Queue 3.6
* Upgrade to java 8
* Upgrade to PIcard / htsjdk 2.4.1
## Functionality
* [Gears](../pipelines/gears.md): Added open reference module of Qiime(http://qiime.org/)
* Fixed default aligner in [Gentrap](../pipelines/gentrap.md) to gsnap
* Makes sample and library id required in [Flexiprep](../pipelines/flexiprep.md)
* Raise some default memory limits
* Fixed a non-required value in Shiva
* Added an auto detect for MACS2 if sample is single-end or paired-end
* Added a sort by name step when htseq in Gentrap is executed
* Fixed file name of bam files in Carp
* Report now corrects for secondary reads in alignment stats
* VcfWithVcf now checks if chromosomes are in the correct reference
* Added sync stats to flexiprep report
* Added check in BamMetrics to check a given bed file is acording to the reference that is used on init of pipeline
\ No newline at end of file
......@@ -36,6 +36,7 @@ pages:
- VcfFilter: 'tools/VcfFilter.md'
- VepNormalizer: 'tools/VepNormalizer.md'
- Release notes:
- 0.7.0: 'releasenotes/release_notes_0.7.0.md'
- 0.6.0: 'releasenotes/release_notes_0.6.0.md'
- 0.5.0: 'releasenotes/release_notes_0.5.0.md'
- 0.4.0: 'releasenotes/release_notes_0.4.0.md'
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment