Commit 58d71f66 authored by Peter van 't Hof's avatar Peter van 't Hof Committed by GitHub

Merge branch 'develop' into Fix-BIOPET-572

parents 8106b4a6 0140969c
......@@ -126,6 +126,9 @@ trait BiopetQScript extends Configurable with GatkLogging { qscript: QScript =>
}
})
val writeHtmlReport: Boolean = config("write_html_report", default = true)
if (writeHtmlReport) {
logger.info("Adding report")
this match {
case q: MultiSampleQScript if q.onlySamples.nonEmpty && !q.samples.forall(x => q.onlySamples.contains(x._1)) =>
......@@ -139,6 +142,7 @@ trait BiopetQScript extends Configurable with GatkLogging { qscript: QScript =>
add(report)
}
}
}
if (!skipWriteDependencies) WriteDependencies.writeDependencies(
functions,
......
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