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biopet.biopet
Commits
41e2da1d
Commit
41e2da1d
authored
Mar 20, 2017
by
Peter van 't Hof
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Fixing mapping front template
parent
bf7a1163
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mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/multisampleMappingFront.ssp
...sasc/biopet/pipelines/mapping/multisampleMappingFront.ssp
+3
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mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/multisampleMappingFront.ssp
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41e2da1d
#import(nl.lumc.sasc.biopet.utils.summary.db.SummaryDb)
#import(nl.lumc.sasc.biopet.utils.summary.db.SummaryDb._)
#import(nl.lumc.sasc.biopet.utils.summary.db.SummaryDb.Implicts._)
#import(nl.lumc.sasc.biopet.core.report.ReportPage)
#import(scala.concurrent.Await)
#import(scala.concurrent.duration.Duration)
...
...
@@ -9,7 +11,7 @@
#{
val run = Await.result(summary.getRuns(runId = Some(runId)), Duration.Inf).head
val samples = Await.result(summary.getSamples(runId = Some(runId)), Duration.Inf)
val settings = summary.getSettingKeys(runId,
Right(pipeline)
,
val settings = summary.getSettingKeys(runId,
pipeline
,
keyValues = Map(
"contigs" -> List("reference", "contigs"),
"species" -> List("reference", "species"),
...
...
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