Commit 3f15ac31 authored by sajvanderzeeuw's avatar sajvanderzeeuw

removed mkdocs theme and OGE from docs

parent e3ae79eb
...@@ -7,21 +7,20 @@ pages: ...@@ -7,21 +7,20 @@ pages:
- ['pipelines/flexiprep.md', 'Pipelines', 'Flexiprep'] - ['pipelines/flexiprep.md', 'Pipelines', 'Flexiprep']
- ['pipelines/mapping.md', 'Pipelines', 'Mapping'] - ['pipelines/mapping.md', 'Pipelines', 'Mapping']
- ['pipelines/sage.md', 'Pipelines', 'Sage'] - ['pipelines/sage.md', 'Pipelines', 'Sage']
- ['tools/SamplesTsvToJson.md','tools','SamplesTsvToJson'] - ['tools/SamplesTsvToJson.md','Tools','SamplesTsvToJson']
- ['tools/BastyGenerateFasta.md','tools','BastyGenerateFasta'] - ['tools/BastyGenerateFasta.md','Tools','BastyGenerateFasta']
- ['tools/bedtointerval.md','tools','BedToInterval'] - ['tools/bedtointerval.md','Tools','BedToInterval']
- ['tools/bedtoolscoveragetocounts.md','tools','BedtoolsCoverageToCounts'] - ['tools/bedtoolscoveragetocounts.md','Tools','BedtoolsCoverageToCounts']
- ['tools/BiopetFlagstat.md','tools','BiopetFlagstat'] - ['tools/BiopetFlagstat.md','Tools','BiopetFlagstat']
- ['tools/CheckAllelesVcfInBam.md','tools','CheckAllelesVcfInBam'] - ['tools/CheckAllelesVcfInBam.md','Tools','CheckAllelesVcfInBam']
- ['tools/ExtractAlignedFastq.md','tools','ExtractAlignedFastq'] - ['tools/ExtractAlignedFastq.md','Tools','ExtractAlignedFastq']
- ['tools/FastqSplitter.md', 'tools','FastqSplitter'] - ['tools/FastqSplitter.md', 'Tools','FastqSplitter']
- ['tools/FindRepeatsPacBio.md','tools','FindRepeatsPacBio'] - ['tools/FindRepeatsPacBio.md','Tools','FindRepeatsPacBio']
- ['tools/VcfFilter.md','tools','VcfFilter'] - ['tools/VcfFilter.md','Tools','VcfFilter']
- ['tools/MpileupToVcf.md', 'tools', 'MpileupToVcf'] - ['tools/MpileupToVcf.md', 'Tools', 'MpileupToVcf']
- ['tools/sagetools.md', 'tools', 'Sagetools'] - ['tools/sagetools.md', 'Tools', 'Sagetools']
- ['tools/WipeReads.md', 'tools', 'WipeReads'] - ['tools/WipeReads.md', 'Tools', 'WipeReads']
- ['cluster/oge.md', 'OpenGridEngine']
- ['about.md', 'About'] - ['about.md', 'About']
- ['license.md', 'License'] - ['license.md', 'License']
theme: readthedocs #theme: readthedocs
repo_url: https://git.lumc.nl/biopet/biopet repo_url: https://git.lumc.nl/biopet/biopet
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