Commit 3dc3aad4 authored by Peter van 't Hof's avatar Peter van 't Hof

Switch to scala 2.10

parent 04f35d97
......@@ -57,7 +57,7 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
......
......@@ -55,14 +55,14 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
<version>2.11.2</version>
<version>2.10.2</version>
</dependency>
<dependency>
<groupId>org.broadinstitute.gatk</groupId>
......@@ -87,7 +87,7 @@
</dependency>
<dependency>
<groupId>io.argonaut</groupId>
<artifactId>argonaut_2.11</artifactId>
<artifactId>argonaut_2.10</artifactId>
<version>6.1-M4</version>
</dependency>
<dependency>
......@@ -110,5 +110,10 @@
<artifactId>scopt_2.10</artifactId>
<version>3.3.0</version>
</dependency>
<dependency>
<groupId>org.scalatra.scalate</groupId>
<artifactId>scalate-core_2.10</artifactId>
<version>1.7.0</version>
</dependency>
</dependencies>
</project>
......@@ -52,7 +52,7 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
......
......@@ -47,7 +47,7 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
......
......@@ -52,7 +52,7 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
......
......@@ -21,12 +21,17 @@ import scalaz._, Scalaz._
import nl.lumc.sasc.biopet.extensions.{ Cufflinks, Ln }
/** General trait for containing cufflinks results */
trait CufflinksProducer { this: Gentrap#Sample =>
trait CufflinksProducer {
import Gentrap._
import Gentrap.ExpMeasures._
import Gentrap.StrandProtocol._
protected def sampleDir: File
protected def sampleId: String
protected def pipeline: Gentrap
protected def alnFile: File
/** Valid cufflink measure types */
protected val cufflinksMeasures = Set(CufflinksStrict, CufflinksGuided, CufflinksBlind)
......
......@@ -57,7 +57,7 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
......
......@@ -210,7 +210,7 @@
<artifactId>scoverage-maven-plugin</artifactId>
<version>${scoverage.plugin.version}</version>
<configuration>
<scalaVersion>2.11.4</scalaVersion>
<scalaVersion>2.10.2</scalaVersion>
<!-- other parameters -->
</configuration>
</plugin>
......
......@@ -48,7 +48,7 @@
</dependency>
<dependency>
<groupId>org.scalatest</groupId>
<artifactId>scalatest_2.11</artifactId>
<artifactId>scalatest_2.10</artifactId>
<version>2.2.1</version>
<scope>test</scope>
</dependency>
......
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