Commit 3c7e15c0 authored by Giannis Moustakas's avatar Giannis Moustakas Committed by GitHub

Update DownloadNcbiAssembly.md

Improved phrasing
parent 487c2c6c
......@@ -20,11 +20,11 @@ Usage: DownloadNcbiAssembly [options]
-o <file> | --output <file>
output Fasta file
--report <file>
where to write report from ncbi
where to write report from NCBI
--nameHeader <string>
What column to use from the NCBI report for the name of the contigs.
All columns in the report can be used but this are the most common field to choose from:
Which column to use from the NCBI report to name the contigs.
All columns from the report can be used but these are the most common fields to choose from:
- 'Sequence-Name': Name of the contig within the assembly
- 'UCSC-style-name': Name of the contig used by UCSC ( like hg19 )
- 'RefSeq-Accn': Unique name of the contig at RefSeq (default for NCBI)
......
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