Commit 3287d8c4 authored by Peter van 't Hof's avatar Peter van 't Hof

Moved value to the correct place

parent e7cccb43
......@@ -67,6 +67,8 @@ trait BiopetQScript extends Configurable with GatkLogging { qscript: QScript =>
val skipWriteDependencies: Boolean = config("skip_write_dependencies", default = false)
val writeHtmlReport: Boolean = config("write_html_report", default = true)
/** Script from queue itself, final to force some checks for each pipeline and write report */
final def script() {
outputDir = config("output_dir")
......@@ -126,8 +128,6 @@ trait BiopetQScript extends Configurable with GatkLogging { qscript: QScript =>
}
})
val writeHtmlReport: Boolean = config("write_html_report", default = true)
if (writeHtmlReport) {
logger.info("Adding report")
this match {
......
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