Commit 316536b4 authored by Peter van 't Hof's avatar Peter van 't Hof

Fix referenc config fetch

parent 4e936deb
......@@ -56,7 +56,7 @@ class DownloadGenomes(val root: Configurable) extends QScript with BiopetQScript
val genomeDir = new File(speciesDir, genomeName)
val fastaFile = new File(genomeDir, "reference.fa")
referenceConfig.get("ncbi_assembly_id") match {
genomeConfig.get("ncbi_assembly_id") match {
case Some(assemblyID: String) => {
val downloadAssembly = new DownloadNcbiAssembly(this)
downloadAssembly.assemblyId = assemblyID
......
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