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biopet.biopet
Commits
2b694375
Commit
2b694375
authored
Aug 17, 2015
by
Peter van 't Hof
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Added requirements to docs
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6b9c8e37
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docs/general/requirements.md
docs/general/requirements.md
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mkdocs.yml
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docs/general/requirements.md
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2b694375
### System Requirements
Biopet is build on top of GATK Queue, which requires having
`java`
installed on the analysis machine(s).
For end-users:
*
[
Java 7 JVM
](
http://www.oracle.com/technetwork/java/javase/downloads/index.html
)
or
[
OpenJDK 7
](
http://openjdk.java.net/install/
)
*
[
Cran R 2.15.3
](
http://cran.r-project.org/
)
For developers:
*
[
OpenJDK 7
](
http://openjdk.java.net/install/
)
*
Minimum of 4 GB RAM {todo: provide more accurate estimation on building}
*
Maven 3
*
Compiled and installed in maven repository version of
[
GATK + Queue
](
https://github.com/broadgsa/gatk-protected/
)
*
IntelliJ or Netbeans 8.0 for development
mkdocs.yml
View file @
2b694375
...
...
@@ -3,6 +3,7 @@ pages:
-
Home
:
'
index.md'
-
General
:
-
Config
:
'
general/config.md'
-
Requirements
:
'
general/requirements.md'
-
Pipelines
:
-
Basty
:
'
pipelines/basty.md'
-
Bam2Wig
:
'
pipelines/bam2wig.md'
...
...
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