Commit 1b34e7ea authored by akaljuvee's avatar akaljuvee

one log line

parent 807100a4
......@@ -52,6 +52,7 @@ class DellyCaller(val root: Configurable) extends BiopetCommandLineFunction with
required(input) +
createEmptyOutputIfNeeded
// when no variants are found then the tool doesn't generate the output file either, in Biopet it's needed that the empty file would be there
def createEmptyOutputIfNeeded = Array("c=$?",
"if [ $c -eq 0 ] && [ ! -f " + outputvcf + " ]; then",
"echo '##fileformat=VCFv4.2' > " + outputvcf,
......
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