Commit 16b67a44 authored by rhpvorderman's avatar rhpvorderman

Fixed none appearing kraken plots in centrifuge report

parent f50e9969
......@@ -77,7 +77,7 @@ object GearsReport extends MultisampleReportBuilder {
val qiimeOpenOtuTable = summary.getFile(runId, "gears", key = "qiime_open_otu_table")
val centrifugePageAllMappingsKronaPlot = GearsKronaPlot.values(summary,
runId,
"gearskraken",
"gearscentrifuge",
"centrifuge_report",
samples,
libraries,
......@@ -86,7 +86,7 @@ object GearsReport extends MultisampleReportBuilder {
Some("centrifuge"))
val centrifugePageUniqueMappingsKronaPlot = GearsKronaPlot.values(summary,
runId,
"gearskraken",
"gearscentrifuge",
"centrifuge_unique_report",
samples,
libraries,
......@@ -216,7 +216,7 @@ object GearsReport extends MultisampleReportBuilder {
Duration.Inf)
val centrifugePageAllMappingsKronaPlot = GearsKronaPlot.values(summary,
runId,
"gearskraken",
"gearscentrifuge",
"centrifuge_report",
samples,
libraries,
......@@ -225,7 +225,7 @@ object GearsReport extends MultisampleReportBuilder {
Some("centrifuge"))
val centrifugePageUniqueMappingsKronaPlot = GearsKronaPlot.values(summary,
runId,
"gearskraken",
"gearscentrifuge",
"centrifuge_unique_report",
samples,
libraries,
......@@ -349,7 +349,7 @@ object GearsReport extends MultisampleReportBuilder {
val centrifugePageAllMappingsKronaPlot = GearsKronaPlot.values(summary,
runId,
"gearskraken",
"gearscentrifuge",
"centrifuge_report",
samples,
libraries,
......@@ -358,7 +358,7 @@ object GearsReport extends MultisampleReportBuilder {
Some("centrifuge"))
val centrifugePageUniqueMappingsKronaPlot = GearsKronaPlot.values(summary,
runId,
"gearskraken",
"gearscentrifuge",
"centrifuge_unique_report",
samples,
libraries,
......
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