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biopet.biopet
Commits
0d996e40
Commit
0d996e40
authored
Apr 20, 2017
by
Peter van 't Hof
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Fixing job script
parent
dda90b04
Changes
2
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
.../nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
+1
-1
gatk
gatk
+1
-1
No files found.
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
View file @
0d996e40
...
...
@@ -54,7 +54,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
}
writer
.
println
(
"set -eubf"
)
writer
.
println
(
"set -o pipefail"
)
writer
.
println
(
this
.
commandLine
)
writer
.
println
(
lines
.
mkString
(
"\n"
)
)
jobDelayTime
.
foreach
(
x
=>
writer
.
println
(
s
"sleep $x"
))
writer
.
close
()
}
...
...
gatk
@
677d7574
Subproject commit
a30ff57a56bee919a619190d43f22d3b8f9ef8d7
Subproject commit
677d757419f515779766b10149b0e92eff71e5b2
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