bamMetricsFront.ssp 1.62 KB
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#import(nl.lumc.sasc.biopet.utils.summary.db.Schema.Run)
#import(nl.lumc.sasc.biopet.utils.summary.db.Schema.Sample)
#import(nl.lumc.sasc.biopet.utils.summary.db.Schema.Library)
<%@ var runId: Int %>
<%@ var sampleId: Option[Int] = None %>
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<%@ var libId: Option[Int] = None %>
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<%@ var run: Run %>
<%@ var allSamples: Seq[Sample] %>
<%@ var allLibraries: Seq[Library] %>
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<table class="table">
<tbody>
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    <tr><th>Pipeline</th><td>GearsSingle</td></tr>
    <tr><th>Version</th><td>${run.version}</td></tr>
    <tr><th>Last commit hash</th><td>${run.commitHash}</td></tr>
    <tr><th>Output directory</th><td>${run.outputDir}</td></tr>
    <tr><th>Sample</th><td>${allSamples.filter(_.id == sampleId.get).headOption.map(_.name)}</td></tr>
    <tr><th>Library</th><td>${allLibraries.filter(_.id == libId.get).headOption.map(_.name)}</td></tr>
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</tbody>
</table>
<br/>
<div class="row">
<div class="col-md-1"></div>
<div class="col-md-6">
    <p>
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        In this web document you can find your <em>BamMetrics</em> pipeline report.
        Different categories of data can be found in the left-side menu.
        Statistics per sample and library can be accessed through the top-level menu.
        Futhermore, you can view all versions of software tools used by selecting <em>Versions</em> from the top menu.
    </p>

    <p>
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        <small>Brought to you by <a href="https://sasc.lumc.nl" target="_blank"><abbr
            title="Sequence Analysis Support Core">SASC</abbr></a> and <a
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        href="https://www.lumc.nl/org/klinische-genetica/" target="_blank"><abbr title="Clinical Genetics LUMC">KG</abbr></a>,
        LUMC.
        </small>
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    </p>
</div>
</div>