[submodule "gatk"] path = gatk url = git@git.lumc.nl:biopet/gatk.git [submodule "flexiprep"] path = flexiprep url = git@git.lumc.nl:biopet/flexiprep.git [submodule "biopet-framework"] path = biopet-framework url = git@git.lumc.nl:biopet/biopet-framework.git