4.0.0 Biopet nl.lumc.sasc Biopet pom 0.4.0-DEV biopet-framework biopet-public-package bammetrics flexiprep gentrap mapping sage kopisu yamsvp gears bam2wig carp toucan shiva basty UTF-8 1.0.4 ${basedir}/src/main/scala ${basedir}/src/test/scala ${basedir}/src/test/resources **/* ${basedir}/src/main/resources **/* org.apache.maven.plugins maven-surefire-plugin ${project.build.directory} maven-dependency-plugin 2.10 copy-installed prepare-package list ${project.build.outputDirectory}/dependency_list.txt net.alchim31.maven scala-maven-plugin 3.2.0 scala-compile compile testCompile -dependencyfile ${project.build.directory}/.scala_dependencies -deprecation -feature org.apache.maven.plugins maven-jar-plugin 2.5 test-jar true true org.apache.maven.plugins maven-compiler-plugin 2.3.2 true org.scalariform scalariform-maven-plugin 0.1.4 process-sources format false true 40 true false false false true false true 2 false true false false false false false true pl.project13.maven git-commit-id-plugin 2.1.10 revision git dd.MM.yyyy '@' HH:mm:ss z false ${basedir}/../../.git true false true src/main/resources/git.properties false 8 false false false 8 -dirty false com.mycila license-maven-plugin 2.6 **/*git* **/License* **/*.bam **/*.bai **/*.gtf **/*.fq **/*.sam **/*.bed **/*.refFlat **/*.R **/*.rscript org.scoverage scoverage-maven-plugin ${scoverage.plugin.version} 2.10.2 org.scoverage scoverage-maven-plugin ${scoverage.plugin.version} ${basedir}/target/site/scoverage