Commits · f6b7b08dba1695ee8f8fc862828704435598d10a · Mirrors / biopet.biopet

19 Jun, 2017 1 commit
- Adding intervals as a config value for users · f6b7b08d
  Peter van 't Hof authored Jun 19, 2017
  
  f6b7b08d
14 Jun, 2017 1 commit
- Merge pull request #139 from biopet/fix-BIOPET-716 · 34a6a407
  Peter van 't Hof authored Jun 14, 2017
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Adding a fallback for readgroupLibrary
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  34a6a407
13 Jun, 2017 2 commits
- Adding a fallback for readgroupLibrary · c005c504
  Peter van 't Hof authored Jun 13, 2017
  
  c005c504
- Merge pull request #138 from biopet/disable-defaults-gvcf · 3dce1f22
  Peter van 't Hof authored Jun 13, 2017
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Disable defaults gvcf
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  3dce1f22
12 Jun, 2017 8 commits
- Removing out commented code · aa826fc4
  Peter van 't Hof authored Jun 12, 2017
  
  aa826fc4
- changing file extensions · 8113db87
  Peter van 't Hof authored Jun 12, 2017
  
  8113db87
- Remove default for gvcf mode · 687d4856
  Peter van 't Hof authored Jun 12, 2017
  
  687d4856
- Merge pull request #137 from biopet/fix-BIOPET-714 · 7cf43078
  Peter van 't Hof authored Jun 12, 2017
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Fixing python scripts
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  7cf43078
- Fixing code warnings · a2910fa6
  pjvan_thof authored Jun 12, 2017
  
  a2910fa6
- Fixing failing jobs · 5f23d851
  pjvan_thof authored Jun 12, 2017
  
  5f23d851
- Style fixes · 0519d4f2
  pjvan_thof authored Jun 12, 2017
  
  0519d4f2
- Set full path to script · 7cee212c
  pjvan_thof authored Jun 12, 2017
  
  7cee212c
11 Jun, 2017 1 commit
- Merge pull request #136 from biopet/fix-BIOPET-704 · 0cdd8314
  Peter van 't Hof authored Jun 11, 2017
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Adding base pipeline to auto check annotations
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  0cdd8314
10 Jun, 2017 3 commits
- Merge branch 'develop' into fix-BIOPET-704 · 43acea10
  Peter van 't Hof authored Jun 10, 2017
  
  43acea10
- Merge pull request #134 from biopet/fix-BIOPET-708 · d0d745e4
  Peter van 't Hof authored Jun 10, 2017
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Remove duplicated error
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  d0d745e4
- Merge pull request #133 from biopet/fix-BIOPET-706 · f3e90c3b
  Peter van 't Hof authored Jun 10, 2017
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Removing fifo pipes control code from log
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  f3e90c3b
09 Jun, 2017 2 commits
- Added some docs · b5cd4468
  Peter van 't Hof authored Jun 09, 2017
  
  b5cd4468
- Improved error message · 8d4d26bd
  Peter van 't Hof authored Jun 09, 2017
  
  8d4d26bd
08 Jun, 2017 16 commits
- Merge branch 'develop' into fix-BIOPET-704 · 1cad39ea
  Peter van 't Hof authored Jun 08, 2017
  
  1cad39ea
- Fixed fifo pipes for single end jobs · 81208886
  pjvan_thof authored Jun 08, 2017
  
  81208886
- Merge branch 'develop' into fix-BIOPET-706 · 341abc04
  Peter van 't Hof authored Jun 08, 2017
  
  341abc04
- Fix bug · a4b2c585
  pjvan_thof authored Jun 08, 2017
  
  a4b2c585
- Merge pull request #132 from biopet/fix-BIOPET-705 · b1b8873e
  Peter van 't Hof authored Jun 08, 2017
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Adding sambamba to mapping
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  b1b8873e
- Remove duplicated error · f4f13245
  pjvan_thof authored Jun 08, 2017
  
  f4f13245
- Closing reader · 5ee41b8c
  pjvan_thof authored Jun 08, 2017
  
  5ee41b8c
- Adding script to log in debug mode · fcf8e624
  pjvan_thof authored Jun 08, 2017
  
  fcf8e624
- Merge branch 'develop' into fix-BIOPET-705 · c8a0ed29
  Peter van 't Hof authored Jun 08, 2017
  
  c8a0ed29
- Merge branch 'develop' into fix-BIOPET-706 · 780bbba8
  Peter van 't Hof authored Jun 08, 2017
  
  780bbba8
- Fix code warnings · 10815705
  pjvan_thof authored Jun 08, 2017
  
  10815705
- Remove redundant end lines · dfd49b19
  pjvan_thof authored Jun 08, 2017
  
  dfd49b19
- Merge pull request #131 from biopet/fix-BIOPET-703 · 5e6901ac
  Peter van 't Hof authored Jun 08, 2017
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Fixed single end metrics
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  5e6901ac
- Fixed typo · 5c9be9a4
  Peter van 't Hof authored Jun 08, 2017
  
  5c9be9a4
- Removing fifo pipes control code from log · f2a01b10
  Peter van 't Hof authored Jun 08, 2017
  
  f2a01b10
- Fixed small bug · b4819f09
  Peter van 't Hof authored Jun 08, 2017
  
  b4819f09
07 Jun, 2017 6 commits
- Fixed default · f1d14870
  Peter van 't Hof authored Jun 07, 2017
  
  f1d14870
- Adding index step · 8df86298
  Peter van 't Hof authored Jun 07, 2017
  
  8df86298
- Fixed single end metrics · 659f81e6
  Peter van 't Hof authored Jun 07, 2017
  
  659f81e6
- Possible to use sambamba for markduplicates · bf2e950a
  Peter van 't Hof authored Jun 07, 2017
  
  bf2e950a
- Added newQual option · 58021f71
  Peter van 't Hof authored Jun 07, 2017
  
  58021f71
- Merge pull request #130 from biopet/fix-BIOPET-697 · 58a0162c
  Peter van 't Hof authored Jun 07, 2017
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Disable insertsize metrics for single end
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  58a0162c