Commits · ed0f3f1a0fd1fb36957e2f68e2118a8b940cdb7d · Mirrors / biopet.biopet

10 Feb, 2015 7 commits
- Error cache now also works on executables · ed0f3f1a
  Peter van 't Hof authored Feb 10, 2015
  
  ed0f3f1a
- Fix hidden stacktraces · 7e4ca301
  Peter van 't Hof authored Feb 10, 2015
  
  7e4ca301
- Remove tests · 86eebea5
  Peter van 't Hof authored Feb 10, 2015
  
  86eebea5
- Remove unused line · 81d8c367
  Peter van 't Hof authored Feb 10, 2015
  
  81d8c367
- addError instead of throwing an exeption · 10c5ff4c
  Peter van 't Hof authored Feb 10, 2015
  
  10c5ff4c
- Added error cache to qscript · f8f5f0ad
  Peter van 't Hof authored Feb 10, 2015
  
  f8f5f0ad
- Added todo on message · f4f73c6b
  Peter van 't Hof authored Feb 10, 2015
  
  f4f73c6b
09 Feb, 2015 5 commits
- Use Option's constructor instead of Some directly · db7d3643
  bow authored Feb 09, 2015
  
  db7d3643
- Fix bug caused by incorrect type usage · 1db23864
  bow authored Feb 09, 2015
  
  1db23864
- Define null explicitly · 266b9f1a
  bow authored Feb 09, 2015
  
  266b9f1a
- Remove required from config calls · b8084935
  Peter van 't Hof authored Feb 09, 2015
  
  b8084935
- Removed required argument for config, now handled by conversions, not a option means required · b7fe37de
  Peter van 't Hof authored Feb 09, 2015
  
  b7fe37de
06 Feb, 2015 5 commits
- Fix for error handling · e3964450
  Peter van 't Hof authored Feb 06, 2015
  
  e3964450
- Refactor code · 2757c868
  Peter van 't Hof authored Feb 06, 2015
  
  2757c868
- Added inverted output file · 4d20276b
  Peter van 't Hof authored Feb 06, 2015
  
  4d20276b
- Add --id and --id-file option · 14300afa
  Peter van 't Hof authored Feb 06, 2015
  
  14300afa
- Add --no-bgfs option · 0999885a
  Peter van 't Hof authored Feb 06, 2015
  
  0999885a
05 Feb, 2015 8 commits
- Make setting the tdf/wig less restrictive and no default names anymore · e929b76a
  Wai Yi Leung authored Feb 05, 2015
  
  e929b76a
- Fix bug on vmem · fb215ab1
  Peter van 't Hof authored Feb 05, 2015
  
  fb215ab1
- Making the output files Option[File], and use Some() to verify whether it was set or not · b2da50cb
  Wai Yi Leung authored Feb 05, 2015
  
  b2da50cb
- Enables manual set of jobOutputFile · b36e7c85
  Peter van 't Hof authored Feb 05, 2015
  
  b36e7c85
- Switch to case classes · 0c2b2242
  Peter van 't Hof authored Feb 05, 2015
  
  0c2b2242
- Fix typo bug · a12e3ec3
  Peter van 't Hof authored Feb 05, 2015
  
  a12e3ec3
- Added more general stats · 0f888fd4
  Peter van 't Hof authored Feb 05, 2015
  
  0f888fd4
- Added scala docs · f913516e
  Peter van 't Hof authored Feb 05, 2015
  
  f913516e
04 Feb, 2015 8 commits
- Fix bug in gubbins output · e5e7978f
  Peter van 't Hof authored Feb 04, 2015
  
  e5e7978f
- Added vcfstats to gatk pipeline · 5121ff20
  Peter van 't Hof authored Feb 04, 2015
  
  5121ff20
- Added queue wrapper · 3ce22c45
  Peter van 't Hof authored Feb 04, 2015
  
  3ce22c45
- Change name · 9c0409f6
  Peter van 't Hof authored Feb 04, 2015
  
  9c0409f6
- Added general stats · 11a6c2db
  Peter van 't Hof authored Feb 04, 2015
  
  11a6c2db
- Added better debug information for the R scripts · 2945cb4a
  Peter van 't Hof authored Feb 04, 2015
  
  2945cb4a
- Added AD fields · 41064621
  Peter van 't Hof authored Feb 04, 2015
  
  41064621
- Added thread scattering · fd22b885
  Peter van 't Hof authored Feb 04, 2015
  
  fd22b885
03 Feb, 2015 7 commits
- Change on empty string check · 2838b39a
  Peter van 't Hof authored Feb 03, 2015
  
  2838b39a
- Use Option[File] for optional files and fix bug with adapter sequence from fastqc capture · 4a9e765c
  bow authored Feb 03, 2015
  
  4a9e765c
- Remove todo · 33a8edef
  Peter van 't Hof authored Feb 03, 2015
  
  33a8edef
- Change to option types · 71eb5183
  Peter van 't Hof authored Feb 03, 2015
  
  71eb5183
- No null returns at files and strings · ffc5158b
  Peter van 't Hof authored Feb 03, 2015
  
  ffc5158b
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored Feb 03, 2015
  
  ad0c55bc
- Reducing the wrapper to take bam and chrom.sizes file only · 92fd93df
  Wai Yi Leung authored Feb 03, 2015
  
  92fd93df