Commits · e4b0834e07da2466ed13e435e6c7ac534376d93d · Mirrors / biopet.biopet

09 May, 2015 1 commit
- Convert R2 to Option[File] · 558d488a
  Peter van 't Hof authored May 09, 2015
  
  558d488a
19 Mar, 2015 3 commits
- Also change dependency for cutadept · fdeace11
  Peter van 't Hof authored Mar 19, 2015 and Wai Yi Leung committed Mar 19, 2015
```
(cherry picked from commit 6459b271)
```
  fdeace11
- Fix dependency bug in flexiprep · c1834fcf
  Peter van 't Hof authored Mar 18, 2015 and Wai Yi Leung committed Mar 19, 2015
```
(cherry picked from commit 95db7a53)
```
  c1834fcf
- Also change dependency for cutadept · 6459b271
  Peter van 't Hof authored Mar 19, 2015
  
  6459b271
18 Mar, 2015 1 commit
- Fix dependency bug in flexiprep · 95db7a53
  Peter van 't Hof authored Mar 18, 2015
  
  95db7a53
23 Feb, 2015 1 commit
- Fix missing import · bd512b09
  Peter van 't Hof authored Feb 23, 2015
  
  bd512b09
19 Feb, 2015 2 commits
- Fix format · 1adebf9e
  Peter van 't Hof authored Feb 19, 2015
  
  1adebf9e
- Added scala docs · 358c598e
  Peter van 't Hof authored Feb 19, 2015
  
  358c598e
18 Feb, 2015 1 commit
- Rename data to settings · 73435d56
  Peter van 't Hof authored Feb 18, 2015
  
  73435d56
17 Feb, 2015 6 commits
- Move sickle summary methods to general sickle extension · d4564525
  Peter van 't Hof authored Feb 17, 2015
  
  d4564525
- Remove old summary code · f6791cc0
  Peter van 't Hof authored Feb 17, 2015
  
  f6791cc0
- Added output Files · d1c0ec8b
  Peter van 't Hof authored Feb 17, 2015
  
  d1c0ec8b
- Add new summary to seqstat · 8145ca77
  Peter van 't Hof authored Feb 17, 2015
  
  8145ca77
- Added new summary jobs · 885b8845
  Peter van 't Hof authored Feb 17, 2015
  
  885b8845
- Converted fastqc to new summary · 273e70f5
  Peter van 't Hof authored Feb 17, 2015
  
  273e70f5
16 Feb, 2015 2 commits
- Added summary framework to mapping and flexiprep · 0c3deab9
  Peter van 't Hof authored Feb 16, 2015
  
  0c3deab9
- Seqstat in Flexiprep · d93b8076
  Wai Yi Leung authored Feb 16, 2015
  
  d93b8076
14 Feb, 2015 1 commit
- Added init version of summary · e8f474c1
  Peter van 't Hof authored Feb 14, 2015
  
  e8f474c1
12 Feb, 2015 1 commit
- Change outputDir to File · 8ca365cb
  Peter van 't Hof authored Feb 12, 2015
  
  8ca365cb
06 Feb, 2015 1 commit
- Fix NullPointerException caused by Option[File] being null · c78ca1be
  bow authored Feb 06, 2015
  
  c78ca1be
03 Feb, 2015 4 commits
- Change to option types · 71eb5183
  Peter van 't Hof authored Feb 03, 2015
  
  71eb5183
- Use requirements check on mapping and flexiprep pipeline · a9c9dfbd
  bow authored Feb 03, 2015
  
  a9c9dfbd
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored Feb 03, 2015
  
  ad0c55bc
- Expose Flexiprep sampleId and libraryId back to the command line · daf3d591
  bow authored Feb 03, 2015
  
  daf3d591
29 Jan, 2015 2 commits
- Remove unused import · 131f4a6f
  bow authored Jan 29, 2015
  
  131f4a6f
- Use sync tool and update its wrapper · 96d44ee9
  bow authored Jan 29, 2015
  
  96d44ee9
28 Jan, 2015 1 commit
- Renaming values · bbd005c3
  Peter van 't Hof authored Jan 28, 2015
  
  bbd005c3
27 Jan, 2015 1 commit
- Remove queue args from pipeline · 449202bd
  Peter van 't Hof authored Jan 27, 2015
  
  449202bd
19 Jan, 2015 1 commit
- Remove unused vars · b3ae6caf
  Peter van 't Hof authored Jan 19, 2015
  
  b3ae6caf
14 Jan, 2015 2 commits
- Remove old script · 1f864153
  Peter van 't Hof authored Jan 14, 2015
  
  1f864153
- Switch to method for adapters · 020ffb1f
  Peter van 't Hof authored Jan 14, 2015
  
  020ffb1f
05 Dec, 2014 1 commit
- Added License to header of all files · b2a02952
  Peter van 't Hof authored Dec 05, 2014
  
  b2a02952
22 Nov, 2014 2 commits
- Added flexiprep as separated artifact · 13430b2e
  Peter van 't Hof authored Nov 22, 2014
  
  13430b2e
- Move BiopetFramework to public maven project · 7d730675
  Peter van 't Hof authored Nov 22, 2014
  
  7d730675
07 Nov, 2014 1 commit
- Change to config · b7952c01
  Peter van 't Hof authored Nov 07, 2014
  
  b7952c01
05 Nov, 2014 1 commit
- Removed config file reading, already done in biopetQScript · 92dc5c59
  Peter van 't Hof authored Nov 05, 2014
  
  92dc5c59
28 Oct, 2014 1 commit
- Build with scaliform · cc8b2760
  Peter van 't Hof authored Oct 28, 2014
  
  cc8b2760
20 Oct, 2014 1 commit
- Removing Python version of seqstat and add the wrapper for the dQual/FastDtools version · 6eec9fed
  wyleung authored Oct 20, 2014
  
  6eec9fed
08 Oct, 2014 1 commit
- Automatic class name conversion · 2c5d1151
  Peter van 't Hof authored Oct 08, 2014
  
  2c5d1151
26 Aug, 2014 1 commit
- Fix on final jobs · bbe9311d
  Peter van 't Hof authored Aug 26, 2014
  
  bbe9311d