Commits · e32832d3ede4fe2d3097f563ce2606d7eab0d999 · Mirrors / biopet.biopet

24 Jul, 2017 2 commits
- Changing name blah ;) · e32832d3
  Peter van 't Hof authored Jul 24, 2017
  
  e32832d3
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-750 · 28db4a1e
  Peter van 't Hof authored Jul 24, 2017
  
  28db4a1e
21 Jul, 2017 3 commits
- Fixed path in stats.json · e70a3c2e
  Peter van 't Hof authored Jul 21, 2017
  
  e70a3c2e
- Merge pull request #159 from biopet/fix-BIOPET-736-peter · 9b83c7aa
  Peter van 't Hof authored Jul 21, 2017
```
Adding documentation for mutect2
```
  9b83c7aa
- Fix text comments · 56a3c8ad
  Peter van 't Hof authored Jul 21, 2017
  
  56a3c8ad
20 Jul, 2017 1 commit
- Fixing tests · 3b61a8de
  Peter van 't Hof authored Jul 20, 2017
  
  3b61a8de
19 Jul, 2017 3 commits
- Move contigs stats to spark logic · 73754420
  Peter van 't Hof authored Jul 19, 2017
  
  73754420
- Move methods to stats object · 6bad5603
  Peter van 't Hof authored Jul 19, 2017
  
  6bad5603
- Removed contigs storage in Stats class · b9a359c2
  Peter van 't Hof authored Jul 19, 2017
  
  b9a359c2
18 Jul, 2017 13 commits
- Adding some more information · 97d831f3
  Peter van 't Hof authored Jul 18, 2017
  
  97d831f3
- Typos · b0e3e032
  Peter van 't Hof authored Jul 18, 2017
  
  b0e3e032
- Fixed tests · 0d184280
  Peter van 't Hof authored Jul 18, 2017
  
  0d184280
- Remove old version and replace by the spark version · 2fd247f5
  Peter van 't Hof authored Jul 18, 2017
  
  2fd247f5
- Adding option to limit number of bins in 1 job · 7d053e65
  Peter van 't Hof authored Jul 18, 2017
  
  7d053e65
- Adding optional properties file for biopet · c5d042c6
  Peter van 't Hof authored Jul 18, 2017
  
  c5d042c6
- Only open file once per method call · 4d76382d
  Peter van 't Hof authored Jul 18, 2017
  
  4d76382d
- Fix compile errors · ba3725c3
  Peter van 't Hof authored Jul 18, 2017
  
  ba3725c3
- Fix compile errors · 3835e14b
  Peter van 't Hof authored Jul 18, 2017
  
  3835e14b
- Remove local jar for testing · 8f9236a6
  Peter van 't Hof authored Jul 18, 2017
  
  8f9236a6
- Switch to output classes for Arg parsing · e82756e6
  Peter van 't Hof authored Jul 18, 2017
  
  e82756e6
- Fix style · 29b937d4
  Peter van 't Hof authored Jul 18, 2017
  
  29b937d4
- Removing out commented code · c1c70187
  Peter van 't Hof authored Jul 18, 2017
  
  c1c70187
17 Jul, 2017 1 commit
- WIP · 08448483
  Peter van 't Hof authored Jul 17, 2017
  
  08448483
16 Jul, 2017 1 commit
- Adding all Jars · 88d51c42
  Peter van 't Hof authored Jul 16, 2017
  
  88d51c42
15 Jul, 2017 3 commits
- Removing some meta files from jar · 2c2e3865
  Peter van 't Hof authored Jul 15, 2017
  
  2c2e3865
- Fixing some compile issues · 38103728
  Peter van 't Hof authored Jul 15, 2017
  
  38103728
- Adding a spark version of vcfstats · 962887bc
  Peter van 't Hof authored Jul 15, 2017
  
  962887bc
14 Jul, 2017 7 commits
- WIP: Spark implementation · 945050cd
  Peter van 't Hof authored Jul 14, 2017
  
  945050cd
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-736-peter · 7b28cfd3
  Peter van 't Hof authored Jul 14, 2017
```
# Conflicts:
#	biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/ContEst.scala
```
  7b28cfd3
- Merge pull request #161 from biopet/fix-BIOPET-746 · 03c4d7d7
  Peter van 't Hof authored Jul 14, 2017
```
Fixing compile and code warnings
```
  03c4d7d7
- Fixing failing test · 1913955a
  Peter van 't Hof authored Jul 14, 2017
  
  1913955a
- Fixed compile error · 1bc4e07b
  Peter van 't Hof authored Jul 14, 2017
  
  1bc4e07b
- Fixing compile error · 37789bb4
  Peter van 't Hof authored Jul 14, 2017
  
  37789bb4
- Put back type changes · 71957bc9
  Peter van 't Hof authored Jul 14, 2017
  
  71957bc9
13 Jul, 2017 6 commits
- Inspection round pipelines · caf71f04
  Peter van 't Hof authored Jul 13, 2017
  
  caf71f04
- Inspection round biopet utils · 2540e8fd
  Peter van 't Hof authored Jul 13, 2017
  
  2540e8fd
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-746 · 2c840f96
  Peter van 't Hof authored Jul 13, 2017
  
  2c840f96
- Style fixes · 04434f88
  Peter van 't Hof authored Jul 13, 2017
  
  04434f88
- Inspection round Biopet Extensions · 1be6069f
  Peter van 't Hof authored Jul 13, 2017
  
  1be6069f
- Style fixes · cbb4d0e2
  Peter van 't Hof authored Jul 13, 2017
  
  cbb4d0e2