Commits · dd937c3a56ba28f15ae8bf8edc141c93e8f3870e · Mirrors / biopet.biopet

21 Jul, 2017 3 commits
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-718 · dd937c3a
  Peter van 't Hof authored Jul 21, 2017
  
  dd937c3a
- Merge pull request #159 from biopet/fix-BIOPET-736-peter · 9b83c7aa
  Peter van 't Hof authored Jul 21, 2017
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Adding documentation for mutect2
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  9b83c7aa
- Fix text comments · 56a3c8ad
  Peter van 't Hof authored Jul 21, 2017
  
  56a3c8ad
18 Jul, 2017 2 commits
- Adding some more information · 97d831f3
  Peter van 't Hof authored Jul 18, 2017
  
  97d831f3
- Typos · b0e3e032
  Peter van 't Hof authored Jul 18, 2017
  
  b0e3e032
14 Jul, 2017 6 commits
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-736-peter · 7b28cfd3
  Peter van 't Hof authored Jul 14, 2017
```
# Conflicts:
#	biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/ContEst.scala
```
  7b28cfd3
- Merge pull request #161 from biopet/fix-BIOPET-746 · 03c4d7d7
  Peter van 't Hof authored Jul 14, 2017
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Fixing compile and code warnings
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  03c4d7d7
- Fixing failing test · 1913955a
  Peter van 't Hof authored Jul 14, 2017
  
  1913955a
- Fixed compile error · 1bc4e07b
  Peter van 't Hof authored Jul 14, 2017
  
  1bc4e07b
- Fixing compile error · 37789bb4
  Peter van 't Hof authored Jul 14, 2017
  
  37789bb4
- Put back type changes · 71957bc9
  Peter van 't Hof authored Jul 14, 2017
  
  71957bc9
13 Jul, 2017 16 commits
- Inspection round pipelines · caf71f04
  Peter van 't Hof authored Jul 13, 2017
  
  caf71f04
- Inspection round biopet utils · 2540e8fd
  Peter van 't Hof authored Jul 13, 2017
  
  2540e8fd
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-746 · 2c840f96
  Peter van 't Hof authored Jul 13, 2017
  
  2c840f96
- Style fixes · 04434f88
  Peter van 't Hof authored Jul 13, 2017
  
  04434f88
- Inspection round Biopet Extensions · 1be6069f
  Peter van 't Hof authored Jul 13, 2017
  
  1be6069f
- Style fixes · cbb4d0e2
  Peter van 't Hof authored Jul 13, 2017
  
  cbb4d0e2
- Merge pull request #160 from biopet/fix-BIOPET-747 · 08851b43
  Peter van 't Hof authored Jul 13, 2017
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Upgrade gather methods
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  08851b43
- Fixed compile issues · f74579d3
  Peter van 't Hof authored Jul 13, 2017
  
  f74579d3
- Code warning found biopet tools · 63547f9b
  Peter van 't Hof authored Jul 13, 2017
  
  63547f9b
- Fix compile error · 0c5a9bbe
  Peter van 't Hof authored Jul 13, 2017
  
  0c5a9bbe
- Style issues · 9ca759c7
  Peter van 't Hof authored Jul 13, 2017
  
  9ca759c7
- Workaround for index creation · c3e801d4
  Peter van 't Hof authored Jul 13, 2017
  
  c3e801d4
- Workaround for making indexes · cb4cfc7e
  Peter van 't Hof authored Jul 13, 2017
  
  cb4cfc7e
- Biopet core code inspection round · 385c71e9
  Peter van 't Hof authored Jul 13, 2017
  
  385c71e9
- Fixing compile and code warnings · c181bccd
  Peter van 't Hof authored Jul 13, 2017
  
  c181bccd
- Switch to GatherBamFiles · a0cfa199
  Peter van 't Hof authored Jul 13, 2017
  
  a0cfa199
12 Jul, 2017 4 commits
- Moving scatter and gather functions to a new package · 3e834749
  Peter van 't Hof authored Jul 12, 2017
  
  3e834749
- Merge pull request #150 from biopet/fix-BIOPET-492 · 23f8f923
  Peter van 't Hof authored Jul 12, 2017
```
First implementation of PIM in biopet
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  23f8f923
- Merge pull request #158 from biopet/fix-BIOPET-744 · 6edd8e7b
  Peter van 't Hof authored Jul 12, 2017
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Fixed nullpointer coming from Queue scattering
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  6edd8e7b
- Fixing random error test · 34e46db9
  Peter van 't Hof authored Jul 12, 2017
  
  34e46db9
11 Jul, 2017 9 commits
- Fix compile issue · c3a431d0
  Peter van 't Hof authored Jul 11, 2017
  
  c3a431d0
- Adding settings · 2057a4f2
  Peter van 't Hof authored Jul 11, 2017
  
  2057a4f2
- Adding settings · d8240bd6
  Peter van 't Hof authored Jul 11, 2017
  
  d8240bd6
- Fixed nullpointer coming from Queue scattering · fa98c8a3
  Peter van 't Hof authored Jul 11, 2017
  
  fa98c8a3
- Remove unused method · 8ff5c10a
  Peter van 't Hof authored Jul 11, 2017
  
  8ff5c10a
- Adding some documentation · f2849b27
  Peter van 't Hof authored Jul 11, 2017
  
  f2849b27
- Fixing code warnings · 449889d4
  Peter van 't Hof authored Jul 11, 2017
  
  449889d4
- Fixing ConTest · d793f5dd
  Peter van 't Hof authored Jul 11, 2017
  
  d793f5dd
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-736-peter · 9890b968
  Peter van 't Hof authored Jul 11, 2017
  
  9890b968