Commits · dc1459171e078cce0cb9a49be56c7d643f3b743e · Mirrors / biopet.biopet

24 Jul, 2017 8 commits
- Merge pull request #164 from biopet/fix-BIOPET-752 · dc145917
  Peter van 't Hof authored Jul 24, 2017
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Adding option to also run qiime with multiple samples at once
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  dc145917
- Merge pull request #163 from biopet/fix-BIOPET-753 · 1e8b3c2f
  Peter van 't Hof authored Jul 24, 2017
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Fixing summary in Basty
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  1e8b3c2f
- Skipping double checkChecksum jobs · 6bda10a5
  Peter van 't Hof authored Jul 24, 2017
  
  6bda10a5
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-753 · 03beb3f1
  Peter van 't Hof authored Jul 24, 2017
  
  03beb3f1
- Merge pull request #162 from biopet/fix-BIOPET-745 · 5d3b5448
  Peter van 't Hof authored Jul 24, 2017
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Fixing some failing tests
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  5d3b5448
- Merge pull request #148 from biopet/fix-BIOPET-732 · d452d397
  Peter van 't Hof authored Jul 24, 2017
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Fix fastq sync prefixes
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  d452d397
- Make it possible to disable gubbins · afa1608d
  Peter van 't Hof authored Jul 24, 2017
  
  afa1608d
- Typos · 1c4febed
  Peter van 't Hof authored Jul 24, 2017
  
  1c4febed
21 Jul, 2017 6 commits
- Added shiva report to Basty · 9c297111
  Peter van 't Hof authored Jul 21, 2017
  
  9c297111
- Merge pull request #159 from biopet/fix-BIOPET-736-peter · 9b83c7aa
  Peter van 't Hof authored Jul 21, 2017
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Adding documentation for mutect2
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  9b83c7aa
- Adding option to also run qiime with multiple samples at once · 8c0431ee
  Peter van 't Hof authored Jul 21, 2017
  
  8c0431ee
- Fixing summary in Basty · d7ef6f44
  Peter van 't Hof authored Jul 21, 2017
  
  d7ef6f44
- Fixing duplicate metrics · 2ca6260e
  Peter van 't Hof authored Jul 21, 2017
  
  2ca6260e
- Fix text comments · 56a3c8ad
  Peter van 't Hof authored Jul 21, 2017
  
  56a3c8ad
18 Jul, 2017 4 commits
- Adding some more information · 97d831f3
  Peter van 't Hof authored Jul 18, 2017
  
  97d831f3
- Fix compile issue · cc2aa04f
  Peter van 't Hof authored Jul 18, 2017
  
  cc2aa04f
- Typos · b0e3e032
  Peter van 't Hof authored Jul 18, 2017
  
  b0e3e032
- Fixing PR comments · 702b9276
  Peter van 't Hof authored Jul 18, 2017
  
  702b9276
14 Jul, 2017 9 commits
- Fixing paired flag for library metrics · 67f8439a
  Peter van 't Hof authored Jul 14, 2017
  
  67f8439a
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-745 · f67a022c
  Peter van 't Hof authored Jul 14, 2017
  
  f67a022c
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-732 · 96d882f0
  Peter van 't Hof authored Jul 14, 2017
```
# Conflicts:
#	biopet-core/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/FastqSync.scala
#	biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
#	biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala
```
  96d882f0
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-736-peter · 7b28cfd3
  Peter van 't Hof authored Jul 14, 2017
```
# Conflicts:
#	biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/ContEst.scala
```
  7b28cfd3
- Merge pull request #161 from biopet/fix-BIOPET-746 · 03c4d7d7
  Peter van 't Hof authored Jul 14, 2017
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Fixing compile and code warnings
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  03c4d7d7
- Fixing failing test · 1913955a
  Peter van 't Hof authored Jul 14, 2017
  
  1913955a
- Fixed compile error · 1bc4e07b
  Peter van 't Hof authored Jul 14, 2017
  
  1bc4e07b
- Fixing compile error · 37789bb4
  Peter van 't Hof authored Jul 14, 2017
  
  37789bb4
- Put back type changes · 71957bc9
  Peter van 't Hof authored Jul 14, 2017
  
  71957bc9
13 Jul, 2017 13 commits
- Inspection round pipelines · caf71f04
  Peter van 't Hof authored Jul 13, 2017
  
  caf71f04
- Inspection round biopet utils · 2540e8fd
  Peter van 't Hof authored Jul 13, 2017
  
  2540e8fd
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-746 · 2c840f96
  Peter van 't Hof authored Jul 13, 2017
  
  2c840f96
- Style fixes · 04434f88
  Peter van 't Hof authored Jul 13, 2017
  
  04434f88
- Inspection round Biopet Extensions · 1be6069f
  Peter van 't Hof authored Jul 13, 2017
  
  1be6069f
- Style fixes · cbb4d0e2
  Peter van 't Hof authored Jul 13, 2017
  
  cbb4d0e2
- Merge pull request #160 from biopet/fix-BIOPET-747 · 08851b43
  Peter van 't Hof authored Jul 13, 2017
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Upgrade gather methods
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  08851b43
- Fixed compile issues · f74579d3
  Peter van 't Hof authored Jul 13, 2017
  
  f74579d3
- Code warning found biopet tools · 63547f9b
  Peter van 't Hof authored Jul 13, 2017
  
  63547f9b
- Fix compile error · 0c5a9bbe
  Peter van 't Hof authored Jul 13, 2017
  
  0c5a9bbe
- Style issues · 9ca759c7
  Peter van 't Hof authored Jul 13, 2017
  
  9ca759c7
- Workaround for index creation · c3e801d4
  Peter van 't Hof authored Jul 13, 2017
  
  c3e801d4
- Workaround for making indexes · cb4cfc7e
  Peter van 't Hof authored Jul 13, 2017
  
  cb4cfc7e