Commits · d9e3b6d1d0610dc7fd3d34f823131ac039f5ce90 · Mirrors / biopet.biopet

02 Mar, 2017 3 commits
- Fixed last unit tests · d9e3b6d1
  Peter van 't Hof authored Mar 02, 2017
  
  d9e3b6d1
- Style fixes · d37ebc75
  Peter van 't Hof authored Mar 02, 2017
  
  d37ebc75
- Added separated outputDirs · c4c62209
  Peter van 't Hof authored Mar 02, 2017
  
  c4c62209
09 Feb, 2017 1 commit
- Rename root to parent · dcff73d6
  Peter van 't Hof authored Feb 09, 2017
  
  dcff73d6
30 Jan, 2017 1 commit
- Changed name in extension · 53240be8
  Peter van 't Hof authored Jan 30, 2017
  
  53240be8
28 Jan, 2017 1 commit
- Rename id to report · 97d82bfc
  Peter van 't Hof authored Jan 28, 2017
  
  97d82bfc
23 Jan, 2017 1 commit
- Adding licence to code · 2fc77904
  Peter van 't Hof authored Jan 23, 2017
  
  2fc77904
10 Dec, 2016 1 commit
- Adding bgzipped fasta · f83a80c0
  Peter van 't Hof authored Dec 10, 2016
  
  f83a80c0
29 Nov, 2016 1 commit
- Fixinf nullpointers on unit tests · 50382ca3
  Peter van 't Hof authored Nov 29, 2016
  
  50382ca3
21 Nov, 2016 2 commits
- Explict test noException · b34b4b44
  Peter van 't Hof authored Nov 21, 2016
  
  b34b4b44
- Changed to smaller and readable test · 4fa9758a
  Peter van 't Hof authored Nov 21, 2016
  
  4fa9758a
18 Nov, 2016 1 commit
- Fixing config files · 91af94b8
  Peter van 't Hof authored Nov 18, 2016
  
  91af94b8
04 Oct, 2016 4 commits
- Fixed input · 243311ec
  Peter van 't Hof authored Oct 04, 2016
  
  243311ec
- Fix style · 91cbb8fd
  Peter van 't Hof authored Oct 04, 2016
  
  91cbb8fd
- Added normalize fasta · 85116b8c
  Peter van 't Hof authored Oct 04, 2016
  
  85116b8c
- User gtf has now higher prio · c6da35a1
  Peter van 't Hof authored Oct 04, 2016
  
  c6da35a1
27 Sep, 2016 4 commits
- Fixing code warning · b8da950d
  Peter van 't Hof authored Sep 27, 2016
  
  b8da950d
- Fix style · 2b20899f
  Peter van 't Hof authored Sep 27, 2016
  
  2b20899f
- Added testing on annotation · d24adc45
  Peter van 't Hof authored Sep 27, 2016
  
  d24adc45
- Added versioned annotation · f75aae9f
  Peter van 't Hof authored Sep 27, 2016
  
  f75aae9f
22 Sep, 2016 6 commits
- Fixed args · d98d49d6
  Peter van 't Hof authored Sep 22, 2016
  
  d98d49d6
- Fixed filters · 02729a98
  Peter van 't Hof authored Sep 22, 2016
  
  02729a98
- Adding outputDir · eb34a798
  Peter van 't Hof authored Sep 22, 2016
  
  eb34a798
- Fix referenc config fetch · 316536b4
  Peter van 't Hof authored Sep 22, 2016
  
  316536b4
- format fix · 4e936deb
  Peter van 't Hof authored Sep 22, 2016
  
  4e936deb
- Added report to pipeline · c906dc08
  Peter van 't Hof authored Sep 22, 2016
  
  c906dc08
21 Sep, 2016 3 commits
- Adding ncbi downloader to pipeline · 1a4b1b9a
  Peter van 't Hof authored Sep 21, 2016
  
  1a4b1b9a
- Move generate index to separated pipeline · ae776370
  Peter van 't Hof authored Sep 21, 2016
  
  ae776370
- Rename to download genomes · 973753d8
  Peter van 't Hof authored Sep 21, 2016
  
  973753d8
01 Jul, 2016 1 commit
- Fixed gtf output · bbf07b61
  Peter van 't Hof authored Jul 01, 2016
  
  bbf07b61
20 Jun, 2016 1 commit
- Added gff to gtf step · 06e3d85c
  Peter van 't Hof authored Jun 20, 2016
  
  06e3d85c
07 Jun, 2016 2 commits
- Added mapping tests for hisat2 · ec99ed54
  Peter van 't Hof authored Jun 07, 2016
  
  ec99ed54
- Added to generateIndexes · 6f754064
  Peter van 't Hof authored Jun 07, 2016
  
  6f754064
25 May, 2016 1 commit
- change ALL licenses across all files. · 55b1b7dd
  Sander Bollen authored May 25, 2016
  
  55b1b7dd
19 May, 2016 2 commits
- Added more tests · a4d3abf8
  Peter van 't Hof authored May 19, 2016
  
  a4d3abf8
- Fix tabix step · ba36a06a
  Peter van 't Hof authored May 19, 2016
  
  ba36a06a
18 May, 2016 2 commits
- Remove deps on intermediates · fa41ea50
  Peter van 't Hof authored May 18, 2016
  
  fa41ea50
- Added contig map for dbsnp · 8ecb7f41
  Peter van 't Hof authored May 18, 2016
  
  8ecb7f41
17 May, 2016 2 commits
- Style fixes · ee5c73f8
  Peter van 't Hof authored May 17, 2016
  
  ee5c73f8
- Added test to write config · b8a26250
  Peter van 't Hof authored May 17, 2016
  
  b8a26250