Commits · d057ab017182027ddb37ad8eb34a617c6cbb634d · Mirrors / biopet.biopet

02 Dec, 2014 8 commits
- Fix bug on gubbins · d057ab01
  Peter van 't Hof authored Dec 02, 2014
  
  d057ab01
- Fix bug on gubbins · fbdd632c
  Peter van 't Hof authored Dec 02, 2014
  
  fbdd632c
- Merge branch 'feature-gubbins' into 'develop' · deab689c
  bow authored Dec 02, 2014
```
Feature gubbins

For #30

See merge request !60
```
  deab689c
- Fix bug on indel tree · 7e8cd038
  Peter van 't Hof authored Dec 02, 2014
  
  7e8cd038
- Fix on outputDir · 09c25863
  Peter van 't Hof authored Dec 02, 2014
  
  09c25863
- Added snp + indels tree · 98db90f1
  Peter van 't Hof authored Dec 02, 2014
  
  98db90f1
- fix bug on mpileup · 1b9ceb90
  Peter van 't Hof authored Dec 02, 2014
  
  1b9ceb90
- Fix bug on output name · e995516a
  Peter van 't Hof authored Dec 02, 2014
  
  e995516a
01 Dec, 2014 10 commits
- Added gubbins to the pipeline · f35b7861
  Peter van 't Hof authored Dec 01, 2014
  
  f35b7861
- Added getBipartitionsFile function · b32bc6cc
  Peter van 't Hof authored Dec 01, 2014
  
  b32bc6cc
- Added workdirectory · 82a8a2b6
  Peter van 't Hof authored Dec 01, 2014
  
  82a8a2b6
- Added extension for gubbins script · 2127bf05
  Peter van 't Hof authored Dec 01, 2014
  
  2127bf05
- Merge branch 'feature-license' into 'develop' · 801b72ed
  bow authored Dec 01, 2014
```
Feature license

Issue: #47
Added license to the project. Bash script to check and reformat if needed.

Also fix for #90 and #91

See merge request !59
```
  801b72ed
- Added license bash script · d8189966
  Peter van 't Hof authored Dec 01, 2014
  
  d8189966
- Added protected license · 17319c63
  Peter van 't Hof authored Dec 01, 2014
  
  17319c63
- Exclude public License from protected package · ac8326b8
  Peter van 't Hof authored Dec 01, 2014
  
  ac8326b8
- Fix dirty build warning · 4a83920e
  Peter van 't Hof authored Dec 01, 2014
  
  4a83920e
- Fix for #90 · 5750c33e
  Peter van 't Hof authored Dec 01, 2014
  
  5750c33e
27 Nov, 2014 8 commits
- Fix for #91 · 016ba380
  Peter van 't Hof authored Nov 27, 2014
  
  016ba380
- Merge branch 'develop' into feature-license · 46a7ca88
  Peter van 't Hof authored Nov 27, 2014
  
  46a7ca88
- added licence option · a49af50a
  Peter van 't Hof authored Nov 27, 2014
  
  a49af50a
- rename file · f859d404
  Peter van 't Hof authored Nov 27, 2014
  
  f859d404
- license template for file headers · 27168a3b
  Peter van 't Hof authored Nov 27, 2014
  
  27168a3b
- Add link to license · f5d53c70
  Peter van 't Hof authored Nov 27, 2014
  
  f5d53c70
- Added license-maven-plugin · b182148e
  Peter van 't Hof authored Nov 27, 2014
  
  b182148e
- Change license · 5a0865a7
  Peter van 't Hof authored Nov 27, 2014
  
  5a0865a7
25 Nov, 2014 7 commits
- Update IntelliJ files · 5abe8248
  bow authored Nov 25, 2014
  
  5abe8248
- Merge branch 'feature-licence' into 'develop' · c6f4c405
  bow authored Nov 25, 2014
```
Feature licence

Switch so separated poms because of license issue

See merge request !58
```
  c6f4c405
- Fix on git hash plugin · 44bf4593
  Peter van 't Hof authored Nov 25, 2014
  
  44bf4593
- move git files · 3d4e4efe
  Peter van 't Hof authored Nov 25, 2014
  
  3d4e4efe
- Remove unused files · e685c701
  Peter van 't Hof authored Nov 25, 2014
  
  e685c701
- remove mvn script, need compiling Queue/Gatk from source · 20b3a06d
  Peter van 't Hof authored Nov 25, 2014
  
  20b3a06d
- Public is now the independent · f956b6fc
  Peter van 't Hof authored Nov 25, 2014
  
  f956b6fc
24 Nov, 2014 3 commits
- Moved scripts to resources · 82d03176
  Peter van 't Hof authored Nov 24, 2014
  
  82d03176
- now works with parent poms · e07befed
  Peter van 't Hof authored Nov 24, 2014
  
  e07befed
- Change names · e51c2232
  Peter van 't Hof authored Nov 24, 2014
  
  e51c2232
22 Nov, 2014 4 commits
- Remove unused xml code · bd27470f
  Peter van 't Hof authored Nov 22, 2014
  
  bd27470f
- Fix on exe · 5d9efd89
  Peter van 't Hof authored Nov 22, 2014
  
  5d9efd89
- Works now over multiple poms · 023005b3
  Peter van 't Hof authored Nov 22, 2014
  
  023005b3
- Change versions dependencies to ${project.version} · 904b43f2
  Peter van 't Hof authored Nov 22, 2014
  
  904b43f2