Commits · ceee380c81a822c6a39117e72170189370db5fcf · Mirrors / biopet.biopet

11 Aug, 2014 2 commits
- Update Sha1sum documentation · ceee380c
  bow authored Aug 08, 2014
  
  ceee380c
- Relative path calculation fix · fa3bbb63
  bow authored Aug 11, 2014
  
  fa3bbb63
07 Aug, 2014 4 commits
- Remove metrics pipeline · 3a27231e
  Peter van 't Hof authored Aug 07, 2014
  
  3a27231e
- test file · 28c39626
  Peter van 't Hof authored Aug 07, 2014
  
  28c39626
- Added metrics pipeline · d90761b6
  Peter van 't Hof authored Aug 07, 2014
  
  d90761b6
- Added summary format · 72ac9801
  Peter van 't Hof authored Aug 07, 2014
  
  72ac9801
06 Aug, 2014 6 commits
- Added sample and library to flexiprep · 66f989df
  Peter van 't Hof authored Aug 06, 2014
  
  66f989df
- Merge commit '5041650c ' into peter · b1188f46
  Peter van 't Hof authored Aug 06, 2014
  
  b1188f46
- Removed old summary and fix file name for new summary · 8c8bb2f3
  Peter van 't Hof authored Aug 06, 2014
  
  8c8bb2f3
- Finalize summary structure · e6527f3b
  Peter van 't Hof authored Aug 06, 2014
  
  e6527f3b
- Added getSummary function · e469c3ab
  Peter van 't Hof authored Aug 06, 2014
  
  e469c3ab
- Make Sample and library name required · 48431cd5
  Peter van 't Hof authored Aug 06, 2014
  
  48431cd5
05 Aug, 2014 1 commit
- Fix on stats output file · e554e595
  Peter van 't Hof authored Aug 05, 2014
  
  e554e595
04 Aug, 2014 19 commits
- Added SeqtkSeq to flexiprep · 1e3bfb26
  Peter van 't Hof authored Aug 04, 2014
  
  1e3bfb26
- Added a freeVar option to the config · 82597e1f
  Peter van 't Hof authored Aug 04, 2014
  
  82597e1f
- Fix end lines on output buffers · 7a63ece8
  Peter van 't Hof authored Aug 04, 2014
  
  7a63ece8
- Fix exitcode on version command · 313e4e59
  Peter van 't Hof authored Aug 04, 2014
  
  313e4e59
- Added constructor · eac6893d
  Peter van 't Hof authored Aug 04, 2014
  
  eac6893d
- Removed unused imports · 4cf5a85d
  Peter van 't Hof authored Aug 04, 2014
  
  4cf5a85d
- changed output on getVersion on fail · 62c8519c
  Peter van 't Hof authored Aug 04, 2014
  
  62c8519c
- getVersion now also use stderr, also log output when version command is failed · fe70b7cc
  Peter van 't Hof authored Aug 04, 2014
  
  fe70b7cc
- Added contaminans option · 5041650c
  sajvanderzeeuw authored Aug 04, 2014
  
  5041650c
- Changed adapter option to Set[String] · 54339295
  Peter van 't Hof authored Aug 04, 2014
  
  54339295
- Merge remote-tracking branch 'origin/bow' into peter · 201e6bfc
  Peter van 't Hof authored Aug 04, 2014
```
Conflicts:
	biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
	flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
```
  201e6bfc
- fix on test file · 8a242160
  Peter van 't Hof authored Aug 04, 2014
  
  8a242160
- Fix on outputdir for flexiprep · a0e16b2f
  Peter van 't Hof authored Aug 04, 2014
  
  a0e16b2f
- Use of new constructors · 7c1fa255
  Peter van 't Hof authored Aug 04, 2014
  
  7c1fa255
- Added constructor and moved Lazy variables in 1 function · 123e830e
  Peter van 't Hof authored Aug 04, 2014
  
  123e830e
- Added mkdir on outputDir · b975df6e
  Peter van 't Hof authored Aug 04, 2014
  
  b975df6e
- Added contructor · e5d44e32
  Peter van 't Hof authored Aug 04, 2014
  
  e5d44e32
- Added SeqtkSeq function to Flexiprep · 43c985ef
  Peter van 't Hof authored Aug 04, 2014
  
  43c985ef
- Fix optional symlink error in Cutadapt step in Flexiprep · 37653696
  bow authored Aug 04, 2014
  
  37653696
01 Aug, 2014 1 commit
- cutadapt config parse fix · 95a926d8
  Zeeuw authored Aug 01, 2014
  
  95a926d8
30 Jul, 2014 6 commits
- Wrappers are now split in general and specific flexiprep extensions · 6b5c4320
  Peter van 't Hof authored Jul 30, 2014
  
  6b5c4320
- Changed config back because of compatibility issues · a2275bd4
  Peter van 't Hof authored Jul 30, 2014
  
  a2275bd4
- Remove unused imports · 3748001f
  Peter van 't Hof authored Jul 30, 2014
  
  3748001f
- Update style and exclude JSON defs from style reformatting · 19b4d9eb
  bow authored Jul 30, 2014
  
  19b4d9eb
- Style reformatting · 19f47e48
  bow authored Jul 30, 2014
  
  19f47e48
- Fix bug in Flexiprep python summary script · df98d70a
  bow authored Jul 30, 2014
  
  df98d70a
29 Jul, 2014 1 commit
- Fix flexiprep summary json parsing · 2b595c2c
  bow authored Jul 29, 2014
  
  2b595c2c