Commits · c28ac35bdd59b49ec3312f16a98937d26443aef1 · Mirrors / biopet.biopet

29 May, 2017 1 commit
- if script already is absolute path, use that · c28ac35b
  Sander Bollen authored May 29, 2017
  
  c28ac35b
16 May, 2017 2 commits
- Fixed bug when python file already exist · 4a1230f4
  Peter van 't Hof authored May 16, 2017
  
  4a1230f4
- Merge pull request #111 from biopet/fix-BIOPET-686 · f2eef40c
  Peter van 't Hof authored May 16, 2017
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Fix centriguge typo in GearsReport
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  f2eef40c
11 May, 2017 2 commits
- Fix centriguge typo in GearsReport · 7adac0dd
  Pappas authored May 11, 2017
  
  7adac0dd
- Merge pull request #110 from biopet/feature-taxextract · 8f638fe4
  Peter van 't Hof authored May 11, 2017
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Feature taxextract
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  8f638fe4
10 May, 2017 5 commits
- Merge branch 'develop' into feature-taxextract · 205f677e
  Peter van 't Hof authored May 10, 2017
  
  205f677e
- add example configs · cb055c44
  Sander Bollen authored May 10, 2017
  
  cb055c44
- refactor naming of gearsjob · 3474f97b
  Sander Bollen authored May 10, 2017
  
  3474f97b
- mark fastq merge steps as intermediate · a0c3f7b1
  Sander Bollen authored May 10, 2017
  
  a0c3f7b1
- fix test failure · 4c9089f9
  Sander Bollen authored May 10, 2017
  
  4c9089f9
09 May, 2017 16 commits
- add documentation to all pipelines using mapping · 73e78c4b
  Sander Bollen authored May 09, 2017
  
  73e78c4b
- add a test · 993edbfb
  Sander Bollen authored May 09, 2017
  
  993edbfb
- conditional in mapping · 025362ef
  Sander Bollen authored May 09, 2017
  
  025362ef
- Merge pull request #109 from biopet/fix-BIOPET-677 · 1203f30c
  Peter van 't Hof authored May 09, 2017
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Added refflatstats to biopet executable
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  1203f30c
- refactor refactor · 40789f0e
  Sander Bollen authored May 09, 2017
  
  40789f0e
- Merge branch 'develop' into fix-BIOPET-677 · 3d991129
  Peter van 't Hof authored May 09, 2017
  
  3d991129
- Added refflatstats to biopet executable · 4286e4ad
  pjvan_thof authored May 09, 2017
  
  4286e4ad
- refactor small bit · bd2c59de
  Sander Bollen authored May 09, 2017
  
  bd2c59de
- set additional dependencies for flexiprep before init · a9cc3a16
  Sander Bollen authored May 09, 2017
  
  a9cc3a16
- Merge pull request #108 from biopet/fix-BIOPET-684 · 13d366b5
  Peter van 't Hof authored May 09, 2017
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Fixing issues in shiva report
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  13d366b5
- Fixing issues in shiva report · c55f1e33
  pjvan_thof authored May 09, 2017
  
  c55f1e33
- Merge branch 'develop' into feature-taxextract · 8a4230cf
  Sander Bollen authored May 09, 2017
  
  8a4230cf
- if indirectly called, input files do not exist yet before run time · cba99be1
  Sander Bollen authored May 09, 2017
  
  cba99be1
- Merge pull request #106 from biopet/fix-BIOPET-668 · 43d57df7
  Peter van 't Hof authored May 09, 2017
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Fixing input files for genotyping
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  43d57df7
- force creation of library and sample ids in flexiprep · b89267d5
  Sander Bollen authored May 09, 2017
  
  b89267d5
- Merge branch 'develop' into fix-BIOPET-668 · 7ca24708
  Peter van 't Hof authored May 09, 2017
  
  7ca24708
08 May, 2017 4 commits
- Merge pull request #107 from biopet/fix-BIOPET-673 · 88330f80
  Peter van 't Hof authored May 08, 2017
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Added annotation files in gentrap report
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  88330f80
- Merge branch 'develop' into fix-BIOPET-673 · 8f332714
  Peter van 't Hof authored May 08, 2017
  
  8f332714
- Merge branch 'develop' into fix-BIOPET-668 · 67bb03ac
  Peter van 't Hof authored May 08, 2017
  
  67bb03ac
- Merge pull request #105 from biopet/fix-BIOPET-677 · 2032fb51
  Peter van 't Hof authored May 08, 2017
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Adding a tool to gather stats from a refflat file
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  2032fb51
05 May, 2017 2 commits
- changed key · 4a0b9cf0
  Ruben Vorderman authored May 05, 2017
  
  4a0b9cf0
- Calculate GC only on gc / at, not on other chars like n · 1163f0ec
  Peter van 't Hof authored May 05, 2017
  
  1163f0ec
04 May, 2017 7 commits
- Updated Gentraps reports to include annotation files. · 22b02b8d
  Ruben Vorderman authored May 04, 2017
  
  22b02b8d
- fix taxextract taxonomy config value · 043b519e
  Sander Bollen authored May 04, 2017
  
  043b519e
- refactor such that gears output is accessible beofre jobs are added to graph · 2048be3d
  Sander Bollen authored May 04, 2017
  
  2048be3d
- Merge branch 'develop' into fix-BIOPET-668 · 8a407510
  Peter van 't Hof authored May 04, 2017
  
  8a407510
- refactor to add jobs within library add_jobs · c3d5a367
  Sander Bollen authored May 04, 2017
  
  c3d5a367
- Merge branch 'develop' into fix-BIOPET-677 · 0c78fdec
  Peter van 't Hof authored May 04, 2017
  
  0c78fdec
- Replace empty values with a dot · d7b22318
  Peter van 't Hof authored May 04, 2017
  
  d7b22318
03 May, 2017 1 commit
- Fixing file names · d1a2a9de
  Peter van 't Hof authored May 03, 2017
  
  d1a2a9de