Commits · be9bfa6a4a2c43ce67c27182c73172004751b69e · Mirrors / biopet.biopet

04 Apr, 2017 3 commits
- one log line · be9bfa6a
  akaljuvee authored Mar 29, 2017
  
  be9bfa6a
- Merge remote-tracking branch 'origin/develop' into fix-BIOPET-306-2 · 9b5627e5
  akaljuvee authored Apr 04, 2017
```
# Conflicts:
#	biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/rscript/LinePlot.scala
#	shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
```
  9b5627e5
- Merge pull request #54 from biopet/johnmous-patch-1 · 7edefbcd
  Peter van 't Hof authored Apr 04, 2017
```
Update mapping.md
```
  7edefbcd
03 Apr, 2017 1 commit
- Update mapping.md · 8b8d03ae
  Giannis Moustakas authored Apr 03, 2017
```
Fix the list of aligners names to match the mapping.scala class code
```
  8b8d03ae
31 Mar, 2017 9 commits
- showing sv counts also when only one sample is being displayed · 484b342d
  akaljuvee authored Mar 31, 2017
  
  484b342d
- - · 2da5df17
  akaljuvee authored Mar 31, 2017
  
  2da5df17
- showing translocation counts aswell · e6462da9
  akaljuvee authored Mar 31, 2017
  
  e6462da9
- Merge pull request #48 from biopet/biopet-609 · 50c3adcc
  Peter van 't Hof authored Mar 31, 2017
```
address biopet-609, fix broken links, reorganize layout. 
```
  50c3adcc
- - · 6f595a73
  akaljuvee authored Mar 31, 2017
  
  6f595a73
- Fixed columns · 1aaabec6
  Peter van 't Hof authored Mar 31, 2017
  
  1aaabec6
- Changes from review · d9308ceb
  Peter van 't Hof authored Mar 31, 2017
  
  d9308ceb
- one log line · c8821092
  akaljuvee authored Mar 31, 2017
  
  c8821092
- Added a teable for the variantcallers · 5ef2f11d
  Peter van 't Hof authored Mar 31, 2017
  
  5ef2f11d
30 Mar, 2017 4 commits
- possibility to specify axis ticks and the labels used there · d4b734b1
  akaljuvee authored Mar 30, 2017
  
  d4b734b1
- sv-s are grouped by type also for the tables · 0a868bd9
  akaljuvee authored Mar 30, 2017
  
  0a868bd9
- sv-s are grouped by type also for the tables · ddada7c6
  akaljuvee authored Mar 30, 2017
  
  ddada7c6
- now shows legend title · 835790c0
  akaljuvee authored Mar 30, 2017
  
  835790c0
29 Mar, 2017 23 commits
- Merge branch 'biopet-609' of https://github.com/biopet/biopet into biopet-609 · d9c69236
  Mei authored Mar 29, 2017
  
  d9c69236
- processed Peter's comments · d07fe476
  Mei authored Mar 29, 2017
  
  d07fe476
- one log line · fb431e6b
  akaljuvee authored Mar 29, 2017
  
  fb431e6b
- plots showing size distribution for different sv types · d1017747
  akaljuvee authored Mar 29, 2017
  
  d1017747
- possibility to use log scale for the x and y axis · 144ccd5d
  akaljuvee authored Mar 29, 2017
  
  144ccd5d
- one log line · 0cbb7ecf
  akaljuvee authored Mar 29, 2017
  
  0cbb7ecf
- Merge branch 'develop' into biopet-609 · 28c7dcb2
  Peter van 't Hof authored Mar 29, 2017
  
  28c7dcb2
- Merge pull request #45 from biopet/epic-summary_reformat · 2c9c7c06
  Peter van 't Hof authored Mar 29, 2017
```
Epic summary reformat
```
  2c9c7c06
- Merge branch 'develop' into epic-summary_reformat · 9ab675f8
  Peter van 't Hof authored Mar 29, 2017
  
  9ab675f8
- Merge branch 'develop' into biopet-609 · ba3b8b04
  Peter van 't Hof authored Mar 29, 2017
  
  ba3b8b04
- Merge pull request #49 from biopet/fix-pipes · 3c83710e
  Peter van 't Hof authored Mar 29, 2017
```
Fix pipes
```
  3c83710e
- Changed version of slick · 001d29ed
  Peter van 't Hof authored Mar 29, 2017
  
  001d29ed
- Merge branch 'develop' into biopet-609 · 47f46b09
  Peter van 't Hof authored Mar 29, 2017
  
  47f46b09
- Merge branch 'develop' into fix-pipes · 8d5a16f5
  Peter van 't Hof authored Mar 29, 2017
  
  8d5a16f5
- Merge remote-tracking branch 'remotes/origin/develop' into epic-summary_reformat · 7dd149bd
  Peter van 't Hof authored Mar 29, 2017
  
  7dd149bd
- Merge pull request #46 from biopet/fix-BIOPET-594 · 23dbd3ee
  Peter van 't Hof authored Mar 29, 2017
```
Upgrade to scala 2.11
```
  23dbd3ee
- Added back scaladocs · f540b700
  Peter van 't Hof authored Mar 29, 2017
  
  f540b700
- Fixing compile issue · 6678abde
  Peter van 't Hof authored Mar 29, 2017
  
  6678abde
- remove links to yamsvp.md · b0a525a2
  Mei authored Mar 29, 2017
  
  b0a525a2
- Fixed pipe command of samtools flagstats · 8e73d322
  Peter van 't Hof authored Mar 27, 2017
```
(cherry picked from commit b75b9047)
```
  8e73d322
- Fixing pipe command · 1c419d6e
  Peter van 't Hof authored Mar 27, 2017
```
(cherry picked from commit e4baa723)
```
  1c419d6e
- Upgraded scopt · d2a31aa7
  Peter van 't Hof authored Mar 29, 2017
  
  d2a31aa7
- Merge branch 'develop' into biopet-609 · 0c7bc8eb
  Peter van 't Hof authored Mar 29, 2017
  
  0c7bc8eb