Commits · a927d4330d8b3245366d33810aeed97ff9a9b1e8 · Mirrors / biopet.biopet

25 Nov, 2014 10 commits
- Merge new framework setup into feature branch · a927d433
  wyleung authored Nov 25, 2014
  
  a927d433
- Merge branch 'develop' of git.lumc.nl:biopet/biopet into feature-yamsvp · 1676c967
  wyleung authored Nov 25, 2014
  
  1676c967
- Update IntelliJ files · 5abe8248
  bow authored Nov 25, 2014
  
  5abe8248
- Merge branch 'feature-licence' into 'develop' · c6f4c405
  bow authored Nov 25, 2014
```
Feature licence

Switch so separated poms because of license issue

See merge request !58
```
  c6f4c405
- Fix on git hash plugin · 44bf4593
  Peter van 't Hof authored Nov 25, 2014
  
  44bf4593
- move git files · 3d4e4efe
  Peter van 't Hof authored Nov 25, 2014
  
  3d4e4efe
- Remove unused files · e685c701
  Peter van 't Hof authored Nov 25, 2014
  
  e685c701
- remove mvn script, need compiling Queue/Gatk from source · 20b3a06d
  Peter van 't Hof authored Nov 25, 2014
  
  20b3a06d
- Public is now the independent · f956b6fc
  Peter van 't Hof authored Nov 25, 2014
  
  f956b6fc
- Splitout the sv caller classes over its over file · bbe3ee3d
  wyleung authored Nov 25, 2014
  
  bbe3ee3d
24 Nov, 2014 3 commits
- Moved scripts to resources · 82d03176
  Peter van 't Hof authored Nov 24, 2014
  
  82d03176
- now works with parent poms · e07befed
  Peter van 't Hof authored Nov 24, 2014
  
  e07befed
- Change names · e51c2232
  Peter van 't Hof authored Nov 24, 2014
  
  e51c2232
22 Nov, 2014 27 commits
- Remove unused xml code · bd27470f
  Peter van 't Hof authored Nov 22, 2014
  
  bd27470f
- Fix on exe · 5d9efd89
  Peter van 't Hof authored Nov 22, 2014
  
  5d9efd89
- Works now over multiple poms · 023005b3
  Peter van 't Hof authored Nov 22, 2014
  
  023005b3
- Change versions dependencies to ${project.version} · 904b43f2
  Peter van 't Hof authored Nov 22, 2014
  
  904b43f2
- Remove pipeline source from framework · 2e372ab4
  Peter van 't Hof authored Nov 22, 2014
  
  2e372ab4
- Added dependencies · 55c476d7
  Peter van 't Hof authored Nov 22, 2014
  
  55c476d7
- Added pipelines to public pom · c2e5e3f9
  Peter van 't Hof authored Nov 22, 2014
  
  c2e5e3f9
- Added yamsvp as artifact · 16392b29
  Peter van 't Hof authored Nov 22, 2014
  
  16392b29
- Added sage as artifact · f440765d
  Peter van 't Hof authored Nov 22, 2014
  
  f440765d
- Added gentrap as artifact · 0acd0e4b
  Peter van 't Hof authored Nov 22, 2014
  
  0acd0e4b
- Added dependency · 3e431336
  Peter van 't Hof authored Nov 22, 2014
  
  3e431336
- Added bammetrics as artifact · d9b8ce2c
  Peter van 't Hof authored Nov 22, 2014
  
  d9b8ce2c
- Added mapping as separated artifact · eac4cd7b
  Peter van 't Hof authored Nov 22, 2014
  
  eac4cd7b
- Added flexiprep as separated artifact · 13430b2e
  Peter van 't Hof authored Nov 22, 2014
  
  13430b2e
- Protected copy content from public · e671341e
  Peter van 't Hof authored Nov 22, 2014
  
  e671341e
- Remove protected source file from public artifacts · 5a474415
  Peter van 't Hof authored Nov 22, 2014
  
  5a474415
- Fix on exe · def28b47
  Peter van 't Hof authored Nov 22, 2014
  
  def28b47
- Added missing dependencies · 956f1d84
  Peter van 't Hof authored Nov 22, 2014
  
  956f1d84
- Pipelines and tools are now abstract · 617f95c0
  Peter van 't Hof authored Nov 22, 2014
  
  617f95c0
- Added protected packaging · 9a265e04
  Peter van 't Hof authored Nov 22, 2014
  
  9a265e04
- Added protected artifact for basty pipeline · 12156894
  Peter van 't Hof authored Nov 22, 2014
  
  12156894
- Added protected artifact for gatk pipelines · 88b4b2a4
  Peter van 't Hof authored Nov 22, 2014
  
  88b4b2a4
- Added protected artifact for gatk extensions · 6441dfd0
  Peter van 't Hof authored Nov 22, 2014
  
  6441dfd0
- Separate framework from packaging · 34023585
  Peter van 't Hof authored Nov 22, 2014
  
  34023585
- Move BiopetFramework to public maven project · 7d730675
  Peter van 't Hof authored Nov 22, 2014
  
  7d730675
- Move pipelines and tools separated value · 6eb59bfc
  Peter van 't Hof authored Nov 22, 2014
  
  6eb59bfc
- moved preLoad config to PipelineCommand · ee97d7f2
  Peter van 't Hof authored Nov 22, 2014
  
  ee97d7f2