Commits · 90d86e6cf06a72af3a75a27488e373561c00b7a4 · Mirrors / biopet.biopet

26 Jul, 2017 1 commit
- Fixing version regex · 90d86e6c
  Peter van 't Hof authored Jul 26, 2017
  
  90d86e6c
25 Jul, 2017 7 commits
- Style fixes · 394ba9f1
  Peter van 't Hof authored Jul 25, 2017
  
  394ba9f1
- Fixing args · 702b064e
  Peter van 't Hof authored Jul 25, 2017
  
  702b064e
- Style fixes · ee4de907
  Peter van 't Hof authored Jul 25, 2017
  
  ee4de907
- Adding stringtie as expresion measure · 26ff1d93
  Peter van 't Hof authored Jul 25, 2017
  
  26ff1d93
- Adding extensions for stringtie · 1a74faa7
  Peter van 't Hof authored Jul 25, 2017
  
  1a74faa7
- No merging with only 1 sample · 23a0b18f
  Peter van 't Hof authored Jul 25, 2017
  
  23a0b18f
- Adding default gtf file to STAR · 532f837c
  Peter van 't Hof authored Jul 25, 2017
  
  532f837c
18 Jul, 2017 1 commit
- Fix compile errors · ba3725c3
  Peter van 't Hof authored Jul 18, 2017
  
  ba3725c3
14 Jul, 2017 1 commit
- Fixing compile error · 37789bb4
  Peter van 't Hof authored Jul 14, 2017
  
  37789bb4
13 Jul, 2017 7 commits
- Style fixes · 04434f88
  Peter van 't Hof authored Jul 13, 2017
  
  04434f88
- Inspection round Biopet Extensions · 1be6069f
  Peter van 't Hof authored Jul 13, 2017
  
  1be6069f
- Fix compile error · 0c5a9bbe
  Peter van 't Hof authored Jul 13, 2017
  
  0c5a9bbe
- Workaround for index creation · c3e801d4
  Peter van 't Hof authored Jul 13, 2017
  
  c3e801d4
- Workaround for making indexes · cb4cfc7e
  Peter van 't Hof authored Jul 13, 2017
  
  cb4cfc7e
- Fixing compile and code warnings · c181bccd
  Peter van 't Hof authored Jul 13, 2017
  
  c181bccd
- Switch to GatherBamFiles · a0cfa199
  Peter van 't Hof authored Jul 13, 2017
  
  a0cfa199
12 Jul, 2017 1 commit
- Moving scatter and gather functions to a new package · 3e834749
  Peter van 't Hof authored Jul 12, 2017
  
  3e834749
11 Jul, 2017 4 commits
- Fixed nullpointer coming from Queue scattering · fa98c8a3
  Peter van 't Hof authored Jul 11, 2017
  
  fa98c8a3
- Remove unused method · 8ff5c10a
  Peter van 't Hof authored Jul 11, 2017
  
  8ff5c10a
- Fixing code warnings · 449889d4
  Peter van 't Hof authored Jul 11, 2017
  
  449889d4
- Fixing ConTest · d793f5dd
  Peter van 't Hof authored Jul 11, 2017
  
  d793f5dd
10 Jul, 2017 3 commits
- Fixing compile issues · 5760560d
  Peter van 't Hof authored Jul 10, 2017
  
  5760560d
- Fixing mutect2 PR · 1de0aefe
  Peter van 't Hof authored Jul 10, 2017
  
  1de0aefe
- Fixing own comments · 8ee74c1b
  Peter van 't Hof authored Jul 10, 2017
  
  8ee74c1b
06 Jul, 2017 1 commit
- wrappers for GATK's ContEst and MuTect2 · 038b3a26
  akaljuvee authored Jul 06, 2017
  
  038b3a26
12 Jun, 2017 1 commit
- Fixing code warnings · a2910fa6
  Peter van 't Hof authored Jun 12, 2017
  
  a2910fa6
07 Jun, 2017 4 commits
- Fixed default · f1d14870
  Peter van 't Hof authored Jun 07, 2017
  
  f1d14870
- Adding index step · 8df86298
  Peter van 't Hof authored Jun 07, 2017
  
  8df86298
- Fixed single end metrics · 659f81e6
  Peter van 't Hof authored Jun 07, 2017
  
  659f81e6
- Added newQual option · 58021f71
  Peter van 't Hof authored Jun 07, 2017
  
  58021f71
01 Jun, 2017 1 commit
- run code formatter on this · 8a694289
  akaljuvee authored Jun 01, 2017
  
  8a694289
31 May, 2017 2 commits
- Fixing unit test · 510d5df7
  Peter van 't Hof authored May 31, 2017
  
  510d5df7
- forcing the user to set the 'maxins' parameter · 3b1b89af
  akaljuvee authored May 31, 2017
  
  3b1b89af
30 May, 2017 2 commits
- Adding a tool to generate a contig map · f697f3e0
  Peter van 't Hof authored May 30, 2017
  
  f697f3e0
- added logging about the parameter ''mate_inner_dist' · 6e1f2a48
  akaljuvee authored May 30, 2017
  
  6e1f2a48
29 May, 2017 1 commit
- Make peakcalling from bam files possible · 0754c573
  Peter van 't Hof authored May 29, 2017
  
  0754c573
28 May, 2017 2 commits
- Raise default threads to 4 · ce4caebd
  Peter van 't Hof authored May 28, 2017
  
  ce4caebd
- Fixing some arguments · 8e414bb6
  Peter van 't Hof authored May 28, 2017
  
  8e414bb6
18 May, 2017 1 commit
- versionRegex fit for old and new Delly · 3b829793
  Moustakas authored May 18, 2017
  
  3b829793