Commits · 904b43f2f2a5c51169c2ab8ad910305e6c98c6cc · Mirrors / biopet.biopet

22 Nov, 2014 26 commits
- Change versions dependencies to ${project.version} · 904b43f2
  Peter van 't Hof authored Nov 22, 2014
  
  904b43f2
- Remove pipeline source from framework · 2e372ab4
  Peter van 't Hof authored Nov 22, 2014
  
  2e372ab4
- Added dependencies · 55c476d7
  Peter van 't Hof authored Nov 22, 2014
  
  55c476d7
- Added pipelines to public pom · c2e5e3f9
  Peter van 't Hof authored Nov 22, 2014
  
  c2e5e3f9
- Added yamsvp as artifact · 16392b29
  Peter van 't Hof authored Nov 22, 2014
  
  16392b29
- Added sage as artifact · f440765d
  Peter van 't Hof authored Nov 22, 2014
  
  f440765d
- Added gentrap as artifact · 0acd0e4b
  Peter van 't Hof authored Nov 22, 2014
  
  0acd0e4b
- Added dependency · 3e431336
  Peter van 't Hof authored Nov 22, 2014
  
  3e431336
- Added bammetrics as artifact · d9b8ce2c
  Peter van 't Hof authored Nov 22, 2014
  
  d9b8ce2c
- Added mapping as separated artifact · eac4cd7b
  Peter van 't Hof authored Nov 22, 2014
  
  eac4cd7b
- Added flexiprep as separated artifact · 13430b2e
  Peter van 't Hof authored Nov 22, 2014
  
  13430b2e
- Protected copy content from public · e671341e
  Peter van 't Hof authored Nov 22, 2014
  
  e671341e
- Remove protected source file from public artifacts · 5a474415
  Peter van 't Hof authored Nov 22, 2014
  
  5a474415
- Fix on exe · def28b47
  Peter van 't Hof authored Nov 22, 2014
  
  def28b47
- Added missing dependencies · 956f1d84
  Peter van 't Hof authored Nov 22, 2014
  
  956f1d84
- Pipelines and tools are now abstract · 617f95c0
  Peter van 't Hof authored Nov 22, 2014
  
  617f95c0
- Added protected packaging · 9a265e04
  Peter van 't Hof authored Nov 22, 2014
  
  9a265e04
- Added protected artifact for basty pipeline · 12156894
  Peter van 't Hof authored Nov 22, 2014
  
  12156894
- Added protected artifact for gatk pipelines · 88b4b2a4
  Peter van 't Hof authored Nov 22, 2014
  
  88b4b2a4
- Added protected artifact for gatk extensions · 6441dfd0
  Peter van 't Hof authored Nov 22, 2014
  
  6441dfd0
- Separate framework from packaging · 34023585
  Peter van 't Hof authored Nov 22, 2014
  
  34023585
- Move BiopetFramework to public maven project · 7d730675
  Peter van 't Hof authored Nov 22, 2014
  
  7d730675
- Move pipelines and tools separated value · 6eb59bfc
  Peter van 't Hof authored Nov 22, 2014
  
  6eb59bfc
- moved preLoad config to PipelineCommand · ee97d7f2
  Peter van 't Hof authored Nov 22, 2014
  
  ee97d7f2
- Merge branch 'develop' into feature-licence · fe0a89b6
  Peter van 't Hof authored Nov 22, 2014
  
  fe0a89b6
- Revert own scatter functions · 853f39a6
  Peter van 't Hof authored Nov 22, 2014
  
  853f39a6
21 Nov, 2014 9 commits
- Merge branch 'feature-reorganize_config' into 'develop' · f12c5edf
  bow authored Nov 21, 2014
```
Feature reorganize config

Step 1 for #89

First check this before i start writing unit tests

See merge request !57
```
  f12c5edf
- Moved fileToConfigMap to utils · 8a392cb4
  Peter van 't Hof authored Nov 21, 2014
  
  8a392cb4
- Fix typo · a5e6b563
  Peter van 't Hof authored Nov 21, 2014
  
  a5e6b563
- Moved methods from config object to utils · ff2ecf79
  Peter van 't Hof authored Nov 21, 2014
  
  ff2ecf79
- Change get to as · a10513a4
  Peter van 't Hof authored Nov 21, 2014
  
  a10513a4
- Moved ImplictConversions to utils · 70c19e12
  Peter van 't Hof authored Nov 21, 2014
  
  70c19e12
- Faster merge · f68e4733
  Peter van 't Hof authored Nov 21, 2014
  
  f68e4733
- Fix for null pointer · 71c265b3
  Peter van 't Hof authored Nov 21, 2014
  
  71c265b3
- Test with own scatter functions · 79d53026
  Peter van 't Hof authored Nov 21, 2014
  
  79d53026
20 Nov, 2014 3 commits
- Merge branch 'feature-skip_AnalyzeCovariates' into 'develop' · 9d7c1e1a
  bow authored Nov 20, 2014
```
Feature skip analyze covariates

Workaround for #17

See merge request !55
```
  9d7c1e1a
- Merge branch 'feature-multiple_configs' into 'develop' · 1cbac3c9
  bow authored Nov 20, 2014
```
Feature multiple configs

see #88

See merge request !54
```
  1cbac3c9
- Fix config value name · d0f5e837
  Peter van 't Hof authored Nov 20, 2014
  
  d0f5e837
19 Nov, 2014 1 commit
- Fix on config load · d50a9777
  Peter van 't Hof authored Nov 19, 2014
  
  d50a9777
18 Nov, 2014 1 commit
- Merge branch 'develop' into feature-licence · 5f206fa7
  Peter van 't Hof authored Nov 18, 2014
  
  5f206fa7