Commits · 850675bc657f535c93067d321dbce1e92ef2ceb0 · Mirrors / biopet.biopet

20 Apr, 2017 3 commits
- filling the samples table · 273091b4
  akaljuvee authored Apr 20, 2017
  
  273091b4
- Fixing temp files · 6d672983
  Peter van 't Hof authored Apr 20, 2017
  
  6d672983
- Fixed bam input · d2c7fc48
  Peter van 't Hof authored Apr 20, 2017
  
  d2c7fc48
19 Apr, 2017 1 commit
- Make common methods for fraction · 162d021a
  Peter van 't Hof authored Apr 19, 2017
  
  162d021a
18 Apr, 2017 4 commits
- Added docs · b0850a6f
  Peter van 't Hof authored Apr 18, 2017
  
  b0850a6f
- Fixing some comments · c5773845
  Peter van 't Hof authored Apr 18, 2017
  
  c5773845
- implicit val that is now required after changes with report builing · 32c6bec7
  akaljuvee authored Apr 18, 2017
  
  32c6bec7
- Fixed config values · 1b6fca2c
  Peter van 't Hof authored Apr 18, 2017
  
  1b6fca2c
16 Apr, 2017 2 commits
- Revert "Remove default arguments" · 0211653b
  Peter van 't Hof authored Apr 16, 2017
  
  0211653b
- Adding correction for scattering · 077a520a
  Peter van 't Hof authored Apr 16, 2017
  
  077a520a
15 Apr, 2017 1 commit
- Adding gender calling haplotypecaller · 8916e812
  Peter van 't Hof authored Apr 15, 2017
  
  8916e812
14 Apr, 2017 3 commits
- Passing gender information to shivavariantcalling · 2465f250
  Peter van 't Hof authored Apr 14, 2017
  
  2465f250
- Adding a printreads tests · 1d9bb1b5
  Peter van 't Hof authored Apr 14, 2017
  
  1d9bb1b5
- Fixing unit tests · dd6b452a
  Peter van 't Hof authored Apr 14, 2017
  
  dd6b452a
13 Apr, 2017 2 commits
- Style fixes · beeb89dc
  Peter van 't Hof authored Apr 13, 2017
  
  beeb89dc
- Fixing small bug · de3e8ea9
  Peter van 't Hof authored Apr 13, 2017
  
  de3e8ea9
12 Apr, 2017 2 commits
- Remove default arguments · bf522ad0
  Peter van 't Hof authored Apr 12, 2017
  
  bf522ad0
- Fixing capture of failures · ce94a022
  Peter van 't Hof authored Apr 12, 2017
  
  ce94a022
11 Apr, 2017 2 commits
- Remove redundent queries · 85054669
  Peter van 't Hof authored Apr 11, 2017
  
  85054669
- Fix some comments · 598f2b3d
  Peter van 't Hof authored Apr 11, 2017
  
  598f2b3d
06 Apr, 2017 7 commits
- parsing vcf files in separate jobs · ad151df9
  akaljuvee authored Apr 06, 2017
  
  ad151df9
- Style fixes · a34e6b23
  Peter van 't Hof authored Apr 06, 2017
  
  a34e6b23
- Give a warning in de logwhen a variantcaller is used that does not support this. · b43464ed
  Peter van 't Hof authored Apr 06, 2017
  
  b43464ed
- Adding bqsr implementation · 06a147a3
  Peter van 't Hof authored Apr 06, 2017
  
  06a147a3
- Only suply bqsr files when printreads is not executed · 80e8742a
  Peter van 't Hof authored Apr 06, 2017
  
  80e8742a
- as Peter wished then in case of bugs now it logs errors instead of throwing exceptions · 1740b1b9
  akaljuvee authored Apr 06, 2017
  
  1740b1b9
- changes Bowo and Peter suggested · 83af6688
  akaljuvee authored Apr 06, 2017
  
  83af6688
05 Apr, 2017 3 commits
- Fixing files · b4cb9bd0
  Peter van 't Hof authored Apr 05, 2017
  
  b4cb9bd0
- Fixing nullpointer · fb25247e
  Peter van 't Hof authored Apr 05, 2017
  
  fb25247e
- Adding possible to skip PrintReads · a76b4665
  Peter van 't Hof authored Apr 05, 2017
  
  a76b4665
04 Apr, 2017 9 commits
- - · ec7fe052
  akaljuvee authored Apr 04, 2017
  
  ec7fe052
- - · b96d0780
  akaljuvee authored Apr 04, 2017
  
  b96d0780
- - · 8e728b77
  akaljuvee authored Apr 04, 2017
  
  8e728b77
- - · a8e368c6
  akaljuvee authored Apr 04, 2017
  
  a8e368c6
- - · 0c224d51
  akaljuvee authored Apr 04, 2017
  
  0c224d51
- - · 3b7faccf
  akaljuvee authored Apr 03, 2017
  
  3b7faccf
- - · 4b067c66
  akaljuvee authored Apr 03, 2017
  
  4b067c66
- - · e60b100f
  akaljuvee authored Apr 03, 2017
  
  e60b100f
- using the new summary · fbc8e4ab
  akaljuvee authored Apr 03, 2017
  
  fbc8e4ab
31 Mar, 2017 1 commit
- showing sv counts also when only one sample is being displayed · 484b342d
  akaljuvee authored Mar 31, 2017
  
  484b342d