Commits · 8337024e0442e3036fd3396127bc57fd02823a9b · Mirrors / biopet.biopet

23 Feb, 2016 2 commits
- Change tests to accept pindel · 7e973ac3
  Wai Yi Leung authored Feb 23, 2016
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Add testcode to accept merged VCFs
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  7e973ac3
- Remove Yamsvp code and optimize BamUtils. · 628069f0
  Wai Yi Leung authored Feb 23, 2016
  
  628069f0
22 Feb, 2016 2 commits
- Adding pindel tests · 31982c15
  Wai Yi Leung authored Feb 22, 2016
  
  31982c15
- Order fixes · 9ce0cde0
  Wai Yi Leung authored Feb 22, 2016
  
  9ce0cde0
29 Jan, 2016 3 commits
- Limit reporting of events in REF/ALT col to < SVTYPE > (saves space and post-processingpower) · 88adefce
  Wai Yi Leung authored Jan 29, 2016
  
  88adefce
- Adding samplingSize to BamUtils - estimateInsertSize · 5164aa32
  Wai Yi Leung authored Jan 29, 2016
  
  5164aa32
- Added insert size estimation. Fix pindel2vcf dependency (depend on pindel, use... · 75b7230c
  Wai Yi Leung authored Jan 29, 2016
```
Added insert size estimation. Fix pindel2vcf dependency (depend on pindel, use beforegraph to set outputpath)
```
  75b7230c
27 Jan, 2016 1 commit
- Pindel update wrapper, specifing the output files (pindel generates more files) · eebab126
  Wai Yi Leung authored Jan 27, 2016
  
  eebab126
20 Jan, 2016 1 commit
- Add pindel2vcf to pipeline · d4901714
  Wai Yi Leung authored Jan 20, 2016
  
  d4901714
15 Jan, 2016 1 commit
- Fix pindel caller (fixing null error with Option[File] = None instead of _) · de250d3f
  Wai Yi Leung authored Jan 15, 2016
  
  de250d3f
14 Jan, 2016 2 commits
- Fix compile errors · e42f7355
  Wai Yi Leung authored Jan 14, 2016
  
  e42f7355
- Adding Pindel to ShivaSVCalling · d1384de8
  Wai Yi Leung authored Jan 14, 2016
  
  d1384de8