Commits · 82c3422b5d8bfdc969adf89bb4224d8f3d18bfd6 · Mirrors / biopet.biopet

20 Apr, 2017 14 commits
- Fix memory corrections · 82c3422b
  pjvan_thof authored Apr 20, 2017
  
  82c3422b
- Typo · ba3a17d4
  pjvan_thof authored Apr 20, 2017
  
  ba3a17d4
- Adding missing output files · 0ebc7e0a
  pjvan_thof authored Apr 20, 2017
  
  0ebc7e0a
- Fix compile error · 4fee107f
  pjvan_thof authored Apr 20, 2017
  
  4fee107f
- Fixing temp files · 112a7299
  pjvan_thof authored Apr 20, 2017
  
  112a7299
- Merge pull request #85 from biopet/fix-BIOPET-661 · 42e2ffe3
  Peter van 't Hof authored Apr 20, 2017
```
Fixed bam input
```
  42e2ffe3
- Fixing temp files · 6d672983
  pjvan_thof authored Apr 20, 2017
  
  6d672983
- Fixed bam input · d2c7fc48
  pjvan_thof authored Apr 20, 2017
  
  d2c7fc48
- Merge pull request #84 from biopet/fix-BIOPET-659 · 7d179c4e
  Peter van 't Hof authored Apr 20, 2017
```
Fixing scatter jobs
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  7d179c4e
- Merge branch 'develop' into fix-BIOPET-659 · 190b7590
  Peter van 't Hof authored Apr 20, 2017
  
  190b7590
- Fixing job script · 0d996e40
  pjvan_thof authored Apr 20, 2017
  
  0d996e40
- Merge pull request #83 from biopet/fix-heatmap-margins · 11260a4c
  Sander Bollen authored Apr 20, 2017
```
Fix margins for heatmaps
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  11260a4c
- Update gatk repo · dda90b04
  Peter van 't Hof authored Apr 20, 2017
  
  dda90b04
- Fix scatter dir · ddc0aa69
  Peter van 't Hof authored Apr 20, 2017
  
  ddc0aa69
19 Apr, 2017 17 commits
- Merge branch 'develop' into fix-heatmap-margins · 75ca4f74
  Peter van 't Hof authored Apr 19, 2017
  
  75ca4f74
- Merge pull request #76 from biopet/fix-BIOPET-655 · 6f78cb16
  Peter van 't Hof authored Apr 19, 2017
```
Adding a printreads tests
```
  6f78cb16
- Merge branch 'develop' into fix-BIOPET-655 · dc1777d2
  Peter van 't Hof authored Apr 19, 2017
  
  dc1777d2
- Merge branch 'develop' into fix-heatmap-margins · 361a7771
  Sander Bollen authored Apr 19, 2017
  
  361a7771
- Merge pull request #78 from biopet/fix-BIOPET-368 · b031a6e7
  Peter van 't Hof authored Apr 19, 2017
```
Adding gender aware variantcalling for gvcf mode
```
  b031a6e7
- Fix compile error · 6132f59d
  Peter van 't Hof authored Apr 19, 2017
  
  6132f59d
- Merge branch 'develop' into fix-BIOPET-368 · dc3a744f
  Peter van 't Hof authored Apr 19, 2017
  
  dc3a744f
- Merge pull request #79 from biopet/fix-BIOPET-656 · 7729de26
  Peter van 't Hof authored Apr 19, 2017
```
Adding new option to haplotypecaller
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  7729de26
- Merge pull request #75 from biopet/fix-BIOPET-650 · 5e2ceed3
  Peter van 't Hof authored Apr 19, 2017
```
Adding Sambamba as merge step
```
  5e2ceed3
- get margins for heatmap from row name length · 037745fe
  Sander Bollen authored Apr 19, 2017
  
  037745fe
- Typo (again) · 20d16fa8
  Peter van 't Hof authored Apr 19, 2017
  
  20d16fa8
- Make common methods for fraction · 162d021a
  Peter van 't Hof authored Apr 19, 2017
  
  162d021a
- Typo · 1b13fd65
  Peter van 't Hof authored Apr 19, 2017
  
  1b13fd65
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-368 · 9ff35f97
  Peter van 't Hof authored Apr 19, 2017
  
  9ff35f97
- Merge branch 'develop' into fix-BIOPET-650 · b9cb7c04
  Peter van 't Hof authored Apr 19, 2017
  
  b9cb7c04
- Merge branch 'develop' into fix-BIOPET-656 · e0b92056
  Peter van 't Hof authored Apr 19, 2017
  
  e0b92056
- Merge pull request #55 from biopet/fix-BIOPET-306 · 02292fea
  Peter van 't Hof authored Apr 19, 2017
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Fix biopet 306
```
  02292fea
18 Apr, 2017 9 commits
- Merge branch 'develop' into fix-BIOPET-306 · 063083df
  Peter van 't Hof authored Apr 18, 2017
  
  063083df
- Merge branch 'develop' into fix-BIOPET-650 · a12237bd
  Peter van 't Hof authored Apr 18, 2017
  
  a12237bd
- Merge branch 'develop' into fix-BIOPET-655 · 490fb781
  Peter van 't Hof authored Apr 18, 2017
  
  490fb781
- Merge branch 'develop' into fix-BIOPET-368 · 5d13b026
  Peter van 't Hof authored Apr 18, 2017
  
  5d13b026
- Merge branch 'develop' into fix-BIOPET-656 · 2c82f97a
  Peter van 't Hof authored Apr 18, 2017
  
  2c82f97a
- Merge pull request #82 from biopet/Fix-BIOPET-572 · 4fb8a7b6
  Peter van 't Hof authored Apr 18, 2017
```
Change default file name from "R1" to "sampleName - libName"
```
  4fb8a7b6
- Merge branch 'develop' into Fix-BIOPET-572 · 58d71f66
  Peter van 't Hof authored Apr 18, 2017
  
  58d71f66
- Added docs · b0850a6f
  Peter van 't Hof authored Apr 18, 2017
  
  b0850a6f
- Merge branch 'develop' into fix-BIOPET-368 · f815eb1a
  Peter van 't Hof authored Apr 18, 2017
  
  f815eb1a