Commits · 81188921f24d4b8630934566421ac323b54b01ee · Mirrors / biopet.biopet

04 Dec, 2016 1 commit
- Fixing BIOPET-487 · 81188921
  Peter van 't Hof authored Dec 04, 2016
  
  81188921
29 Nov, 2016 2 commits
- Invert option, true is default now · b4e999f0
  Peter van 't Hof authored Nov 29, 2016
  
  b4e999f0
- Fixinf nullpointers on unit tests · 50382ca3
  Peter van 't Hof authored Nov 29, 2016
  
  50382ca3
26 Nov, 2016 1 commit
- Added main flag to most main jobs · 00e96408
  Peter van 't Hof authored Nov 26, 2016
  
  00e96408
26 Aug, 2016 2 commits
- Bump to version 0.8.0-SNAPSHOT · e8783392
  Peter van 't Hof authored Aug 26, 2016
  
  e8783392
- Bump to version 0.7.0 · bf548a42
  Peter van 't Hof authored Aug 26, 2016
  
  bf548a42
25 Aug, 2016 1 commit
- Bump version to 0.7.0-RC1 · 6542c2db
  Peter van 't Hof authored Aug 25, 2016
  
  6542c2db
13 Jun, 2016 3 commits
- Style fixes · 20d86c78
  Peter van 't Hof authored Jun 13, 2016
  
  20d86c78
- Added test for no sample to flexiprep · 8a56e56b
  Peter van 't Hof authored Jun 13, 2016
  
  8a56e56b
- Fixed sample and library check · 18bc6d01
  Peter van 't Hof authored Jun 13, 2016
  
  18bc6d01
10 Jun, 2016 1 commit
- Added sync stats to report · 2ca932ce
  Peter van 't Hof authored Jun 10, 2016
  
  2ca932ce
30 May, 2016 2 commits
- Fixed adapter feeding · 6c521e70
  Peter van 't Hof authored May 30, 2016
  
  6c521e70
- Changed custom adapters feeding · 884091eb
  Peter van 't Hof authored May 30, 2016
  
  884091eb
25 May, 2016 1 commit
- change ALL licenses across all files. · 55b1b7dd
  Sander Bollen authored May 25, 2016
  
  55b1b7dd
13 May, 2016 1 commit
- Remove empty constructs · 847b1265
  Wai Yi Leung authored May 13, 2016
  
  847b1265
11 May, 2016 3 commits
- Style fix · edc5fc7f
  Peter van 't Hof authored May 11, 2016
  
  edc5fc7f
- Fix cutadapt test. · d5808c90
  Wai Yi Leung authored May 11, 2016
  
  d5808c90
- Update test · 6104d68e
  Wai Yi Leung authored May 11, 2016
  
  6104d68e
09 May, 2016 1 commit
- enableRCtrimming is used to enable trimming of Reverse Complement versions of adapters · 39772398
  Wai Yi Leung authored May 09, 2016
  
  39772398
06 May, 2016 2 commits
- Fix file location · 0518d284
  Wai Yi Leung authored May 06, 2016
  
  0518d284
- Move file · 3c04ddef
  Wai Yi Leung authored May 06, 2016
  
  3c04ddef
04 May, 2016 2 commits
- Fixed import · d01a6749
  Peter van 't Hof authored May 04, 2016
  
  d01a6749
- Move files · d2ae86e5
  Peter van 't Hof authored May 04, 2016
  
  d2ae86e5
03 May, 2016 1 commit
- Move scatter functions to biopet extensions · c3ec3cb9
  Peter van 't Hof authored May 03, 2016
  
  c3ec3cb9
27 Apr, 2016 1 commit
- Move public to root · 49517b11
  Peter van 't Hof authored Apr 27, 2016
  
  49517b11
25 Aug, 2014 3 commits

Peter van 't Hof authored Aug 25, 2014

Conflicts:
	flexiprep/nbactions.xml
	gatk/gatk-pipeline/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
	gatk/gatk-variantcalling/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
	mapping/examples/test.json
	mapping/nbactions.xml
	pom.xml

4557807c

Merge all maven packages into 1 · 7624b929
Peter van 't Hof authored Aug 25, 2014

7624b929
Added BiopetPackage as complete package · 4f6ea975
Peter van 't Hof authored Aug 25, 2014

4f6ea975

20 Aug, 2014 1 commit
- Fix bug on single end library's · feeafebb
  Peter van 't Hof authored Aug 20, 2014
  
  feeafebb
18 Aug, 2014 1 commit
- Changed Int to Long · 610b8971
  Peter van 't Hof authored Aug 18, 2014
  
  610b8971
14 Aug, 2014 2 commits
- Added Vcf sample compare module · d94892dd
  Peter van 't Hof authored Aug 14, 2014
  
  d94892dd
- Fix on end files on flexiprep, not intermediate anymore · 9d40cb55
  Peter van 't Hof authored Aug 14, 2014
  
  9d40cb55
12 Aug, 2014 1 commit
- Fix class name for report · 9ff06b99
  Peter van 't Hof authored Aug 12, 2014
  
  9ff06b99
11 Aug, 2014 5 commits
- Removed unused imports · 48524cb0
  Peter van 't Hof authored Aug 11, 2014
  
  48524cb0
- Output of flexiprep is now a zipped file · d26a67ab
  Peter van 't Hof authored Aug 11, 2014
  
  d26a67ab
- Switch to md5sum · 41fa137b
  Peter van 't Hof authored Aug 11, 2014
  
  41fa137b
- Removed unused scripts · 72985a2d
  Peter van 't Hof authored Aug 11, 2014
  
  72985a2d
- Changed referenceFile to reference · b0cd998e
  Peter van 't Hof authored Aug 11, 2014
  
  b0cd998e
08 Aug, 2014 1 commit
- Removed skipsummary option · daf02820
  Peter van 't Hof authored Aug 08, 2014
  
  daf02820
07 Aug, 2014 1 commit
- Fix jobname · 30839b70
  Peter van 't Hof authored Aug 07, 2014
  
  30839b70