Commits · 7979998e9ed8fc067949c1a8d47e7597dffe6686 · Mirrors / biopet.biopet

05 Jan, 2017 1 commit
- Check whether sample exists in vcf file · 7979998e
  Sander Bollen authored Jan 05, 2017
  
  7979998e
22 Dec, 2016 2 commits
- Merge branch 'fix-BIOPET-504' into 'develop' · 725ed53a
  Sander Bollen authored Dec 22, 2016
```
Added output files

Tiny fix

See merge request !503
```
  725ed53a
- Merge branch 'fix-BIOPET-317' into 'develop' · 409c5382
  Sander Bollen authored Dec 22, 2016
```
Added an option to not keep the final bam file



See merge request !501
```
  409c5382
21 Dec, 2016 1 commit
- Added output files · a1b738e0
  Peter van 't Hof authored Dec 21, 2016
  
  a1b738e0
20 Dec, 2016 1 commit
- Fix comments on merge request · f7fb0c72
  Peter van 't Hof authored Dec 20, 2016
  
  f7fb0c72
16 Dec, 2016 2 commits
- Style fixes · 3ba41502
  Peter van 't Hof authored Dec 16, 2016
  
  3ba41502
- Added output files to bamstats · 819bada6
  Peter van 't Hof authored Dec 16, 2016
  
  819bada6
15 Dec, 2016 9 commits
- Fixing compile warning · 8654affb
  Peter van 't Hof authored Dec 15, 2016
  
  8654affb
- Fixing stackoverflow · eb40009e
  Peter van 't Hof authored Dec 15, 2016
  
  eb40009e
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-317 · c882c5ac
  Peter van 't Hof authored Dec 15, 2016
  
  c882c5ac
- Fixed compile issues · c11614e9
  Peter van 't Hof authored Dec 15, 2016
  
  c11614e9
- Added default to multisample mapping · ba8bfc42
  Peter van 't Hof authored Dec 15, 2016
  
  ba8bfc42
- Merge branch 'fix-vep_versions' into 'develop' · e17daab5
  Sander Bollen authored Dec 15, 2016
```
Fixed lazy val



See merge request !495
```
  e17daab5
- Fix typo · ecd019f6
  Sander Bollen authored Dec 15, 2016
  
  ecd019f6
- Merge branch 'fix-BIOPET-460' into 'develop' · 5cf8b675
  Sander Bollen authored Dec 15, 2016
```
Fix biopet 460



See merge request !497
```
  5cf8b675
- Added an option to not keep the final bam file · 42de7719
  Peter van 't Hof authored Dec 15, 2016
  
  42de7719
13 Dec, 2016 5 commits
- Added docs · 5d20d8d7
  Peter van 't Hof authored Dec 13, 2016
  
  5d20d8d7
- Updated docstring · 1f3c4c1b
  Peter van 't Hof authored Dec 13, 2016
  
  1f3c4c1b
- Merge branch 'fix-BIOPET-496' into 'develop' · e814f159
  Sander Bollen authored Dec 13, 2016
```
Fixing BIOPET-496



See merge request !499
```
  e814f159
- Some languages updates · 756c6579
  Sander Bollen authored Dec 13, 2016
  
  756c6579
- Merge branch 'fix-BIOPET-317' into 'develop' · 7de7e6ee
  Sander Bollen authored Dec 13, 2016
```
Fixing BIOPET-317



See merge request !489
```
  7de7e6ee
12 Dec, 2016 12 commits
- Merge branch 'fix-BIOPET-483' into 'develop' · ba0deb1c
  Sander Bollen authored Dec 12, 2016
```
Adding bgzipped fasta



See merge request !498
```
  ba0deb1c
- Merge branch 'for-BIOPET-476' into 'develop' · 45c2a57d
  Sander Bollen authored Dec 12, 2016
```
For biopet 476



See merge request !494
```
  45c2a57d
- some spelling fixes. · 8a847041
  Sander Bollen authored Dec 12, 2016
  
  8a847041
- Typo · 4a702a03
  Peter van 't Hof authored Dec 12, 2016
  
  4a702a03
- Fixing BIOPET-496 · 04e8b466
  Peter van 't Hof authored Dec 12, 2016
  
  04e8b466
- Fixed comments of merge requests · b2965063
  Peter van 't Hof authored Dec 12, 2016
  
  b2965063
- Format fixes · 622c5c66
  Peter van 't Hof authored Dec 12, 2016
  
  622c5c66
- Format fixes · ad09bed2
  Peter van 't Hof authored Dec 12, 2016
  
  ad09bed2
- Added unit testing · 2a90eac3
  Peter van 't Hof authored Dec 12, 2016
  
  2a90eac3
- Format fixes · 982c9348
  Peter van 't Hof authored Dec 12, 2016
  
  982c9348
- Fixed input and output · 68c080d8
  Peter van 't Hof authored Dec 12, 2016
  
  68c080d8
- Change input and output · 08e62c12
  Peter van 't Hof authored Dec 12, 2016
  
  08e62c12
10 Dec, 2016 7 commits
- Adding bgzipped fasta · f83a80c0
  Peter van 't Hof authored Dec 10, 2016
  
  f83a80c0
- Simplify dbsnp · 741ab7f5
  Peter van 't Hof authored Dec 10, 2016
  
  741ab7f5
- Adding validateVcf to shiva on dbsnp · ba60c6d4
  Peter van 't Hof authored Dec 10, 2016
  
  ba60c6d4
- Change logging type · 831f9ae4
  Peter van 't Hof authored Dec 10, 2016
  
  831f9ae4
- Fixed final message · b10bad38
  Peter van 't Hof authored Dec 10, 2016
  
  b10bad38
- Fixed position check · c3321a66
  Peter van 't Hof authored Dec 10, 2016
  
  c3321a66
- Added base version of validate vcf · 069db857
  Peter van 't Hof authored Dec 10, 2016
  
  069db857