Commits · 75b7230cec865ee98e62b9eb82d810e0a6f03130 · Mirrors / biopet.biopet

29 Jan, 2016 1 commit
- Added insert size estimation. Fix pindel2vcf dependency (depend on pindel, use... · 75b7230c
  Wai Yi Leung authored Jan 29, 2016
```
Added insert size estimation. Fix pindel2vcf dependency (depend on pindel, use beforegraph to set outputpath)
```
  75b7230c
27 Jan, 2016 1 commit
- Pindel update wrapper, specifing the output files (pindel generates more files) · eebab126
  Wai Yi Leung authored Jan 27, 2016
  
  eebab126
19 Jan, 2016 1 commit
- Style refactor of PindelCaller wrapper · 674e3168
  Wai Yi Leung authored Jan 19, 2016
  
  674e3168
18 Jan, 2016 1 commit
- Pindel outputpath fix. · ef29ace5
  Wai Yi Leung authored Jan 18, 2016
  
  ef29ace5
15 Jan, 2016 5 commits
- Fix output path for pindel (pindel outputs to certain dir with prefix_) · 8867a510
  Wai Yi Leung authored Jan 15, 2016
  
  8867a510
- Fix output path for pindel (pindel outputs to certain dir with prefix_) · 102aa9e7
  Wai Yi Leung authored Jan 15, 2016
  
  102aa9e7
- Changed defaults and fix the pindelconfig script. · bdca6a2d
  Wai Yi Leung authored Jan 15, 2016
  
  bdca6a2d
- Fix major error, things in beforeCmd was intended to do in beforeGraph · 9db6c09d
  Wai Yi Leung authored Jan 15, 2016
  
  9db6c09d
- Fix pindel caller (fixing null error with Option[File] = None instead of _) · de250d3f
  Wai Yi Leung authored Jan 15, 2016
  
  de250d3f
14 Jan, 2016 2 commits
- Fix compile errors · e42f7355
  Wai Yi Leung authored Jan 14, 2016
  
  e42f7355
- Adding Pindel to ShivaSVCalling · d1384de8
  Wai Yi Leung authored Jan 14, 2016
  
  d1384de8
12 Jan, 2016 1 commit
- Adding the pindel wrapper to the extensions. Updated to support v0.2.5b8 · 7213a031
  Wai Yi Leung authored Jan 12, 2016
  
  7213a031