Commits · 74091f0ff1d0f16a6cda3fca2333f4b36f7070ff · Mirrors / biopet.biopet

04 Jul, 2016 1 commit
- Remove insertsize tag from summary when not executed · 502e3177
  Peter van 't Hof authored Jul 04, 2016
  
  502e3177
20 Jun, 2016 3 commits
- match message with code · bdd9d532
  Sander Bollen authored Jun 20, 2016
  
  bdd9d532
- Added report to qiime open reference · bace55eb
  Peter van 't Hof authored Jun 20, 2016
  
  bace55eb
- Added open reference method · 7657016c
  Peter van 't Hof authored Jun 20, 2016
  
  7657016c
15 Jun, 2016 1 commit
- Fixed output files name · 6e5dd48d
  Peter van 't Hof authored Jun 15, 2016
  
  6e5dd48d
10 Jun, 2016 2 commits
- attempt to fix vcfstats so that it will always output something, even if there are 0 variants · 7d77c4c1
  Sander Bollen authored Jun 10, 2016
  
  7d77c4c1
- Style fix · aa262bed
  Peter van 't Hof authored Jun 10, 2016
  
  aa262bed
07 Jun, 2016 4 commits
- Added threads flag · 4ede1b88
  Peter van 't Hof authored Jun 07, 2016
  
  4ede1b88
- Added mapping tests for hisat2 · ec99ed54
  Peter van 't Hof authored Jun 07, 2016
  
  ec99ed54
- Added to generateIndexes · 6f754064
  Peter van 't Hof authored Jun 07, 2016
  
  6f754064
- Added hisat2build extension · 40802e4e
  Peter van 't Hof authored Jun 07, 2016
  
  40802e4e
06 Jun, 2016 2 commits
- Fixed unit tests · 7a91b2c0
  Peter van 't Hof authored Jun 06, 2016
  
  7a91b2c0
- Raise memory · 6ca33f57
  Peter van 't Hof authored Jun 06, 2016
  
  6ca33f57
03 Jun, 2016 1 commit
- Put scattering back in for baserecalibration · 9461ff47
  Peter van 't Hof authored Jun 03, 2016
  
  9461ff47
02 Jun, 2016 4 commits
- Ensure the correct hisat2 index extension is detected · 0a0c3ef7
  bow authored Jun 02, 2016
  
  0a0c3ef7
- Style updates · 0892321f
  bow authored Jun 02, 2016
  
  0892321f
- Add initial hisat2 wrapper · 30ef4896
  bow authored Jun 02, 2016
  
  30ef4896
- autostyle fixes · 92a3a1b7
  Sander Bollen authored Jun 02, 2016
  
  92a3a1b7
01 Jun, 2016 2 commits
- remove gvf method · a50e42cc
  Peter van 't Hof authored Jun 01, 2016
  
  a50e42cc
- fixed a config value · 95f8441a
  Peter van 't Hof authored Jun 01, 2016
  
  95f8441a
30 May, 2016 3 commits
- Style changes · 0dc6aa4c
  Peter van 't Hof authored May 30, 2016
  
  0dc6aa4c
- Added downsample option to gears · d4934ea6
  Peter van 't Hof authored May 30, 2016
  
  d4934ea6
- Adding seqtk sample extension · 34a14bb4
  Peter van 't Hof authored May 30, 2016
  
  34a14bb4
26 May, 2016 1 commit
- sort input bed and fix test · c708df45
  Sander Bollen authored May 26, 2016
  
  c708df45
25 May, 2016 3 commits
- create genome file only once per fasta index · 15d13bb6
  Sander Bollen authored May 25, 2016
  
  15d13bb6
- change ALL licenses across all files. · 55b1b7dd
  Sander Bollen authored May 25, 2016
  
  55b1b7dd
- Style fix · 37ae7b76
  Peter van 't Hof authored May 25, 2016
  
  37ae7b76
23 May, 2016 1 commit
- Fix style · 22f48ed8
  Peter van 't Hof authored May 23, 2016
  
  22f48ed8
17 May, 2016 8 commits
- Fixed output · a3c21103
  Peter van 't Hof authored May 17, 2016
  
  a3c21103
- Fix extension · 9bc45be2
  Peter van 't Hof authored May 17, 2016
  
  9bc45be2
- style changes · f7937990
  Peter van 't Hof authored May 17, 2016
  
  f7937990
- Add gtf to refflat · 9cb010e9
  Peter van 't Hof authored May 17, 2016
  
  9cb010e9
- Add input annotation · 006e38a7
  Peter van 't Hof authored May 17, 2016
  
  006e38a7
- Fixed type · a2cba5e1
  Peter van 't Hof authored May 17, 2016
  
  a2cba5e1
- Make curl pipable · d03b8be7
  Peter van 't Hof authored May 17, 2016
  
  d03b8be7
- Throw error whenever the arguments are not complete · 5c9e81cd
  Wai Yi Leung authored May 17, 2016
  
  5c9e81cd
13 May, 2016 4 commits
- Style · 1be44c94
  Wai Yi Leung authored May 13, 2016
  
  1be44c94
- Test output file needed · a9df0f22
  Wai Yi Leung authored May 13, 2016
  
  a9df0f22
- Extended tests. · 87c6e9d6
  Wai Yi Leung authored May 13, 2016
  
  87c6e9d6
- The files to test on.. · 36a52827
  Wai Yi Leung authored May 13, 2016
  
  36a52827