Commits · 6778ef3c712660676761161d7064369f6ab17a32 · Mirrors / biopet.biopet

28 Jul, 2017 5 commits
- Merge pull request #168 from biopet/fix-BIOPET-757 · 6778ef3c
  Peter van 't Hof authored Jul 28, 2017
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Adding a tool to merge jobreports
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  6778ef3c
- Merge pull request #170 from biopet/fix-BIOPET-758 · 0ef2b27c
  Peter van 't Hof authored Jul 28, 2017
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Adding cpu hours to the Queue job report
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  0ef2b27c
- Merge pull request #172 from biopet/fixing-report-error · 6085a932
  Peter van 't Hof authored Jul 28, 2017
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Fixing some unsafe code
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  6085a932
- Merge pull request #169 from biopet/fix-BIOPET-719 · 046b719e
  Peter van 't Hof authored Jul 28, 2017
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Adding Stringtie to gentrap
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  046b719e
- Merge pull request #171 from biopet/fix-BIOPET-759 · 702a85e8
  Peter van 't Hof authored Jul 28, 2017
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Merge stats.json files
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  702a85e8
27 Jul, 2017 4 commits
- Fixing some unsafe code · 79a8c186
  pjvan_thof authored Jul 27, 2017
  
  79a8c186
- No overwrite of the total.json anymore · 1a7fd7db
  pjvan_thof authored Jul 27, 2017
  
  1a7fd7db
- Remove duplicate tests · 7d0148d6
  Peter van 't Hof authored Jul 27, 2017
  
  7d0148d6
- Merge stats.json files · 1efcf0c5
  Peter van 't Hof authored Jul 27, 2017
  
  1efcf0c5
26 Jul, 2017 5 commits
- Sorting table correctly now · cccd07cf
  pjvan_thof authored Jul 26, 2017
  
  cccd07cf
- Adding corrections for cores in the job reports · 2b833eaf
  pjvan_thof authored Jul 26, 2017
  
  2b833eaf
- Style fixes · 8f6baa78
  Peter van 't Hof authored Jul 26, 2017
  
  8f6baa78
- Fixing version regex · 90d86e6c
  Peter van 't Hof authored Jul 26, 2017
  
  90d86e6c
- Adding tool to executable · 9b4d4a3f
  Peter van 't Hof authored Jul 26, 2017
  
  9b4d4a3f
25 Jul, 2017 19 commits
- Adding tool to merge jobreports · 52fd8f61
  Peter van 't Hof authored Jul 25, 2017
  
  52fd8f61
- Style fixes · 394ba9f1
  Peter van 't Hof authored Jul 25, 2017
  
  394ba9f1
- Fixing args · 702b064e
  Peter van 't Hof authored Jul 25, 2017
  
  702b064e
- WIP · 90eebdfa
  Peter van 't Hof authored Jul 25, 2017
  
  90eebdfa
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-719 · 97d77eb7
  Peter van 't Hof authored Jul 25, 2017
  
  97d77eb7
- Merge pull request #167 from biopet/fix-BIOPET-755 · df582f1a
  Peter van 't Hof authored Jul 25, 2017
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Small fixes for Gentrap
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  df582f1a
- Merge pull request #166 from biopet/fix-BIOPET-718 · 23bdc5b2
  Peter van 't Hof authored Jul 25, 2017
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Removing sample/library variantcalling
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  23bdc5b2
- Adding merged file to summary · 4d81e180
  pjvan_thof authored Jul 25, 2017
  
  4d81e180
- Style fixes · ee4de907
  pjvan_thof authored Jul 25, 2017
  
  ee4de907
- Adding stringtie as expresion measure · 26ff1d93
  pjvan_thof authored Jul 25, 2017
  
  26ff1d93
- Adding extensions for stringtie · 1a74faa7
  pjvan_thof authored Jul 25, 2017
  
  1a74faa7
- Adding more default memory · 931771fe
  pjvan_thof authored Jul 25, 2017
  
  931771fe
- No merging with only 1 sample · 23a0b18f
  pjvan_thof authored Jul 25, 2017
  
  23a0b18f
- Adding default gtf file to STAR · 532f837c
  pjvan_thof authored Jul 25, 2017
  
  532f837c
- Fixing arguments · 250e63be
  pjvan_thof authored Jul 25, 2017
  
  250e63be
- Style changes · f3071de2
  pjvan_thof authored Jul 25, 2017
  
  f3071de2
- Fixing tests · 565cb85a
  Peter van 't Hof authored Jul 25, 2017
  
  565cb85a
- Removing sample and library variantcalling · c46b3983
  Peter van 't Hof authored Jul 25, 2017
  
  c46b3983
- Merge pull request #165 from biopet/fix-BIOPET-750 · c913b602
  Peter van 't Hof authored Jul 25, 2017
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Adding spark support for VcfStats
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  c913b602
24 Jul, 2017 7 commits
- Merge pull request #164 from biopet/fix-BIOPET-752 · dc145917
  Peter van 't Hof authored Jul 24, 2017
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Adding option to also run qiime with multiple samples at once
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  dc145917
- Merge pull request #163 from biopet/fix-BIOPET-753 · 1e8b3c2f
  Peter van 't Hof authored Jul 24, 2017
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Fixing summary in Basty
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  1e8b3c2f
- Skipping double checkChecksum jobs · 6bda10a5
  Peter van 't Hof authored Jul 24, 2017
  
  6bda10a5
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-753 · 03beb3f1
  Peter van 't Hof authored Jul 24, 2017
  
  03beb3f1
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-750 · db65e3d7
  Peter van 't Hof authored Jul 24, 2017
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# Conflicts:
#	biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
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  db65e3d7
- Merge remote-tracking branch 'remotes/origin/fix-BIOPET-750' into fix-BIOPET-750 · 5c5ae1cd
  Peter van 't Hof authored Jul 24, 2017
  
  5c5ae1cd
- Merge pull request #162 from biopet/fix-BIOPET-745 · 5d3b5448
  Peter van 't Hof authored Jul 24, 2017
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Fixing some failing tests
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  5d3b5448