Commits · 62b9462484533d8a1036b9e6a4d05b8c7dfbdc28 · Mirrors / biopet.biopet

10 Jan, 2015 1 commit
- Add more logging · 62b94624
  Peter van 't Hof authored Jan 10, 2015
  
  62b94624
09 Jan, 2015 1 commit
- Change to fastq reader from htsjdk · 784064ce
  Peter van 't Hof authored Jan 09, 2015
  
  784064ce
09 Dec, 2014 6 commits
- Change pom version · 06536548
  Peter van 't Hof authored Dec 09, 2014
  
  06536548
- Merge branch 'release-0.2.0' into develop · b9a26ee4
  Peter van 't Hof authored Dec 09, 2014
  
  b9a26ee4
- Unmask pipelines and tools · 74efe128
  Peter van 't Hof authored Dec 09, 2014
  
  74efe128
- Change Pom to version 0.2.0 · 1572cb02
  Peter van 't Hof authored Dec 09, 2014
  
  1572cb02
- Merge branch 'master' into release-0.2.0 · 0c14ce58
  Peter van 't Hof authored Dec 09, 2014
```
Conflicts:
	biopet-framework/pom.xml
```
  0c14ce58
- Merge branch 'feature-documentation' into 'release-0.2.0' · fe1d703a
  Peter van 't Hof authored Dec 09, 2014
```
merge Feature documentation into release 0.2.0

#38

See merge request !63
```
  fe1d703a
08 Dec, 2014 5 commits
- putted config in general folder · ab38bbe2
  sajvanderzeeuw authored Dec 08, 2014
  
  ab38bbe2
- Mask MergeAlleles tool · f04076fd
  Peter van 't Hof authored Dec 08, 2014
  
  f04076fd
- removed mkdocs theme and OGE from docs · 3f15ac31
  sajvanderzeeuw authored Dec 08, 2014
  
  3f15ac31
- Fix for #95 · 63a0ef68
  Peter van 't Hof authored Dec 08, 2014
  
  63a0ef68
- changes in docs format · e3ae79eb
  sajvanderzeeuw authored Dec 08, 2014
  
  e3ae79eb
05 Dec, 2014 5 commits
- changes in docs format · b1deafba
  sajvanderzeeuw authored Dec 05, 2014
  
  b1deafba
- docs added · 288b6bf2
  sajvanderzeeuw authored Dec 05, 2014
  
  288b6bf2
- Added License to header of all files · b2a02952
  Peter van 't Hof authored Dec 05, 2014
  
  b2a02952
- Change Licenses · 41a81ab7
  Peter van 't Hof authored Dec 05, 2014
  
  41a81ab7
- Fix compile error · 629f1f6b
  Peter van 't Hof authored Dec 05, 2014
  
  629f1f6b
04 Dec, 2014 14 commits
- Mask oncompleted pipelines · 18936b56
  Peter van 't Hof authored Dec 04, 2014
  
  18936b56
- Change pom to version 0.2.0-rc1 · 203b60cc
  Peter van 't Hof authored Dec 04, 2014
  
  203b60cc
- Merge remote-tracking branch 'remotes/origin/feature-documentation' into release-0.2.0 · a0c297b3
  Peter van 't Hof authored Dec 04, 2014
  
  a0c297b3
- added start up sage docs · 731d6089
  sajvanderzeeuw authored Dec 04, 2014
  
  731d6089
- Merge branch 'feature-genotype_filter' into 'develop' · 610e9ad5
  bow authored Dec 04, 2014
```
Feature genotype filter

For #92

See merge request !62
```
  610e9ad5
- Added Qual filter option · 4a4fa9be
  Peter van 't Hof authored Dec 04, 2014
  
  4a4fa9be
- Fix compile error · 54d50322
  Peter van 't Hof authored Dec 04, 2014
  
  54d50322
- Merge branch 'feature-prerelease_fixes' into 'develop' · 110b16b0
  Peter van 't Hof authored Dec 04, 2014
```
Feature prerelease fixes

Commit messages should be clear enough :).

See merge request !61
```
  110b16b0
- Split every filter option into functions · a5030119
  Peter van 't Hof authored Dec 04, 2014
  
  a5030119
- Added text to args · a190d233
  Peter van 't Hof authored Dec 04, 2014
  
  a190d233
- Pattern match refactor in ExtractAlignedFastq · b83f5736
  bow authored Dec 04, 2014
  
  b83f5736
- Documentation updates · 10518502
  bow authored Dec 04, 2014
  
  10518502
- Test refactors · 846acd6c
  bow authored Dec 04, 2014
  
  846acd6c
- No default limitation on variantcalling when target_bed is given · 09bf4a36
  Peter van 't Hof authored Dec 04, 2014
  
  09bf4a36
03 Dec, 2014 2 commits
- Changes in documentation · 1a209ea0
  sajvanderzeeuw authored Dec 03, 2014
  
  1a209ea0
- Added 4 new options for vcfFilter · ecff240c
  Peter van 't Hof authored Dec 03, 2014
  
  ecff240c
02 Dec, 2014 6 commits
- Fix bug on gubbins · d057ab01
  Peter van 't Hof authored Dec 02, 2014
  
  d057ab01
- Changes in documentation of GATK BASTY adn BastyGenerateFasta · 72936783
  sajvanderzeeuw authored Dec 02, 2014
  
  72936783
- Fix bug on gubbins · fbdd632c
  Peter van 't Hof authored Dec 02, 2014
  
  fbdd632c
- Changes in help screen GatkPipeline · 026b2015
  sajvanderzeeuw authored Dec 02, 2014
  
  026b2015
- Merge branch 'feature-gubbins' into 'develop' · deab689c
  bow authored Dec 02, 2014
```
Feature gubbins

For #30

See merge request !60
```
  deab689c
- Fix bug on indel tree · 7e8cd038
  Peter van 't Hof authored Dec 02, 2014
  
  7e8cd038