Commits · 52b55ac37678aeafac72c1de8f9ff61148b949f9 · Mirrors / biopet.biopet

19 Apr, 2017 2 commits
- Inserted new mvn-scalafmt plugin in pom.xml · 52b55ac3
  Ruben Vorderman authored Apr 19, 2017
  
  52b55ac3
- Merge pull request #55 from biopet/fix-BIOPET-306 · 02292fea
  Peter van 't Hof authored Apr 19, 2017
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Fix biopet 306
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  02292fea
18 Apr, 2017 10 commits
- Merge branch 'develop' into fix-BIOPET-306 · 063083df
  Peter van 't Hof authored Apr 18, 2017
  
  063083df
- Merge pull request #82 from biopet/Fix-BIOPET-572 · 4fb8a7b6
  Peter van 't Hof authored Apr 18, 2017
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Change default file name from "R1" to "sampleName - libName"
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  4fb8a7b6
- Merge branch 'develop' into Fix-BIOPET-572 · 58d71f66
  Peter van 't Hof authored Apr 18, 2017
  
  58d71f66
- - · 2e681cb4
  akaljuvee authored Apr 18, 2017
  
  2e681cb4
- implicit val that is now required after changes with report builing · 32c6bec7
  akaljuvee authored Apr 18, 2017
  
  32c6bec7
- Updated tests to check new filenames · 8106b4a6
  Ruben Vorderman authored Apr 18, 2017
  
  8106b4a6
- Merge remote-tracking branch 'origin' into Fix-BIOPET-572 · 9d05586a
  Ruben Vorderman authored Apr 18, 2017
  
  9d05586a
- Merge pull request #80 from biopet/fix-BIOPET-657 · 0140969c
  Peter van 't Hof authored Apr 18, 2017
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Make it possible to disable HTML report
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  0140969c
- Style fix · 9dc7cded
  Peter van 't Hof authored Apr 18, 2017
  
  9dc7cded
- Make it possible to disable HTML report · b40b3f8d
  Peter van 't Hof authored Apr 18, 2017
  
  b40b3f8d
16 Apr, 2017 1 commit
- Merge pull request #74 from biopet/Fix-BIOPET-653 · 1f2295c2
  Peter van 't Hof authored Apr 16, 2017
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Changed Bwa mem -M flag default to 'false'
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  1f2295c2
14 Apr, 2017 14 commits
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-306 · b60f86cb
  Peter van 't Hof authored Apr 14, 2017
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# Conflicts:
#	shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
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  b60f86cb
- Merge branch 'develop' into Fix-BIOPET-653 · fabaff76
  Peter van 't Hof authored Apr 14, 2017
  
  fabaff76
- Merge pull request #73 from biopet/fix-BIOPET-649 · 811fe4c2
  Peter van 't Hof authored Apr 14, 2017
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Fix CleverFixVCF memory issue
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  811fe4c2
- Merge branch 'develop' into fix-BIOPET-649 · 5de27e08
  Peter van 't Hof authored Apr 14, 2017
  
  5de27e08
- Merge pull request #69 from biopet/fix-BIOPET-654 · 8fa9668a
  Peter van 't Hof authored Apr 14, 2017
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Remove default arguments
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  8fa9668a
- Fix outputname issue · ae0a5dfd
  Ruben Vorderman authored Apr 14, 2017
  
  ae0a5dfd
- Merge branch 'develop' into fix-BIOPET-654 · 310bcfe4
  Peter van 't Hof authored Apr 14, 2017
  
  310bcfe4
- Merge pull request #71 from biopet/fix-BIOPET-651 · 8c5573ad
  Peter van 't Hof authored Apr 14, 2017
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Adding a adapter cutoff for fastqc -> cutadapt
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  8c5573ad
- Merge branch 'develop' into fix-BIOPET-649 · 988d35a6
  Peter van 't Hof authored Apr 14, 2017
  
  988d35a6
- Fixed code warnings · c347da53
  Ruben Vorderman authored Apr 14, 2017
  
  c347da53
- Disabled default M flag · 1a7d4610
  Ruben Vorderman authored Apr 14, 2017
  
  1a7d4610
- Merge branch 'develop' into fix-BIOPET-651 · 5e121141
  Peter van 't Hof authored Apr 14, 2017
  
  5e121141
- Merge branch 'develop' into fix-BIOPET-654 · 8c2a6ec8
  Peter van 't Hof authored Apr 14, 2017
  
  8c2a6ec8
- Merge pull request #68 from biopet/fix-BIOPET-640 · 865f33cf
  Peter van 't Hof authored Apr 14, 2017
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Fixing report failures
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  865f33cf
13 Apr, 2017 8 commits
- Merge remote-tracking branch 'origin' into fix-BIOPET-649 · 0aad3827
  Ruben Vorderman authored Apr 13, 2017
  
  0aad3827
- Added memorysize parameter · 07c78a35
  Ruben Vorderman authored Apr 13, 2017
  
  07c78a35
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-651 · d336ee60
  Peter van 't Hof authored Apr 13, 2017
  
  d336ee60
- Merge branch 'develop' into fix-BIOPET-654 · fa948c3a
  Peter van 't Hof authored Apr 13, 2017
  
  fa948c3a
- Merge branch 'develop' into fix-BIOPET-640 · b20ce2ee
  Peter van 't Hof authored Apr 13, 2017
  
  b20ce2ee
- Merge pull request #70 from biopet/fix-BIOPET-635 · abeeb845
  Peter van 't Hof authored Apr 13, 2017
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Fixing small bug
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  abeeb845
- Style fixes · beeb89dc
  Peter van 't Hof authored Apr 13, 2017
  
  beeb89dc
- Fixing small bug · de3e8ea9
  Peter van 't Hof authored Apr 13, 2017
  
  de3e8ea9
12 Apr, 2017 4 commits
- Adding a adapter cutoff for fastqc -> cutadapt · d6f1be2d
  Peter van 't Hof authored Apr 12, 2017
  
  d6f1be2d
- Remove default arguments · bf522ad0
  Peter van 't Hof authored Apr 12, 2017
  
  bf522ad0
- Merge branch 'develop' into fix-BIOPET-640 · 3b0bc744
  Peter van 't Hof authored Apr 12, 2017
  
  3b0bc744
- Fixing capture of failures · ce94a022
  Peter van 't Hof authored Apr 12, 2017
  
  ce94a022
11 Apr, 2017 1 commit
- Merge pull request #67 from biopet/CleverFixVCF · 7a95865b
  Peter van 't Hof authored Apr 11, 2017
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Clever fix vcf
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  7a95865b