- 02 Jun, 2016 1 commit
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bow authored
fixed a config value See merge request !417
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- 01 Jun, 2016 3 commits
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Peter van 't Hof authored
Fix star mapping keep unmapped reads in bamfile An addition of a config value to the `Mapping` pipeline. Let Star output unmapped reads. See merge request !416
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Peter van 't Hof authored
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Peter van 't Hof authored
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- 31 May, 2016 3 commits
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Wai Yi Leung authored
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Wai Yi Leung authored
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Wai Yi Leung authored
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- 30 May, 2016 2 commits
- 29 May, 2016 1 commit
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bow authored
Added more filter options fixes #316 See merge request !410
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- 27 May, 2016 2 commits
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Peter van 't Hof authored
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Peter van 't Hof authored
remove gatk-specific parts from license Fixes #343 @h.mei @p.j.van_t_hof Could you check this? Thanks :-). See merge request !406
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- 25 May, 2016 11 commits
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Sander Bollen authored
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Sander Bollen authored
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Peter van 't Hof authored
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Wai Yi Leung authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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- 24 May, 2016 1 commit
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bow authored
Fix mapping plot in report Fixes #349 See merge request !411
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- 23 May, 2016 5 commits
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Peter van 't Hof authored
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Peter van 't Hof authored
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bow authored
Somehow the rootpath was broken fixes #347 See merge request !408
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Peter van 't Hof authored
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Peter van 't Hof authored
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- 20 May, 2016 1 commit
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Wai Yi Leung authored
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- 19 May, 2016 2 commits
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Sander Bollen authored
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Peter van 't Hof authored
Fix vcf files from SV calling output to contain samplename The SV callers in our pipeline name the samples 'default', ideally all of these 'default' should be named to the sample called accordingly. Otherwise we have issues later on in the SV merging. fixes #321 See merge request !365
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- 18 May, 2016 6 commits
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Wai Yi Leung authored
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bow authored
Added check on unused config values Fixes #327 See merge request !400
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bow authored
Added singletons to summary See merge request !404
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Peter van 't Hof authored
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bow authored
Reference index generation See merge request !396
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Wai Yi Leung authored
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- 17 May, 2016 2 commits
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Peter van 't Hof authored
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Peter van 't Hof authored
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