Commits · 43fc01cd5eb5afebea216c1cce0a98838e7e0ffc · Mirrors / biopet.biopet

30 Jan, 2015 3 commits
- Move SVcallers into the toplevel extensions directory · 43fc01cd
  Wai Yi Leung authored Jan 30, 2015
  
  43fc01cd
- Add notes on input - output compression · a08964e0
  bow authored Jan 30, 2015
  
  a08964e0
- Use AsyncFastqWriter instead of BasicFastqWriter · 33f6e6d7
  bow authored Jan 30, 2015
  
  33f6e6d7
29 Jan, 2015 7 commits
- Add output annotation to sync tool stats output · 0d3e053a
  bow authored Jan 29, 2015
  
  0d3e053a
- Use sync tool and update its wrapper · 96d44ee9
  bow authored Jan 29, 2015
  
  96d44ee9
- Remove old sync script and its wrapper · 32d55edd
  bow authored Jan 29, 2015
  
  32d55edd
- Add version comment · 32731cbe
  Peter van 't Hof authored Jan 29, 2015
  
  32731cbe
- Fix args · 41264b83
  Peter van 't Hof authored Jan 29, 2015
  
  41264b83
- Fix scala docs format error · 2d0f6129
  Peter van 't Hof authored Jan 29, 2015
  
  2d0f6129
- Added wigToBigWig extension · b7ace90c
  Peter van 't Hof authored Jan 29, 2015
  
  b7ace90c
28 Jan, 2015 4 commits
- fix scala docs (again) · b61616ea
  Peter van 't Hof authored Jan 28, 2015
  
  b61616ea
- Fix scala docs · 9371bf0f
  Peter van 't Hof authored Jan 28, 2015
  
  9371bf0f
- Renaming values · 33f456b9
  Peter van 't Hof authored Jan 28, 2015
  
  33f456b9
- Renaming values · bbd005c3
  Peter van 't Hof authored Jan 28, 2015
  
  bbd005c3
27 Jan, 2015 11 commits
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored Jan 27, 2015
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored Jan 27, 2015
  
  49ba8c53
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored Jan 27, 2015
  
  fed34592
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored Jan 27, 2015
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored Jan 27, 2015
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored Jan 27, 2015
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored Jan 27, 2015
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored Jan 27, 2015
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored Jan 27, 2015
  
  c05ab685
- Added init functions · 715d7f82
  Peter van 't Hof authored Jan 27, 2015
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored Jan 27, 2015
  
  1410432c
26 Jan, 2015 1 commit
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored Jan 26, 2015
  
  7911ce0e
21 Jan, 2015 3 commits
- Added defaultSample and defaultLibrary · 789bfa8e
  Peter van 't Hof authored Jan 21, 2015
  
  789bfa8e
- Added a template as example · a878479e
  Peter van 't Hof authored Jan 21, 2015
  
  a878479e
- Change sample to var · 55378379
  Peter van 't Hof authored Jan 21, 2015
  
  55378379
20 Jan, 2015 4 commits
- New abstract classes for samples and libraries · f9cef581
  Peter van 't Hof authored Jan 20, 2015
  
  f9cef581
- Fixed nullpointer · 1c6ea1d9
  Peter van 't Hof authored Jan 20, 2015
  
  1c6ea1d9
- Simplify multisampleQscript · a5fb226c
  Peter van 't Hof authored Jan 20, 2015
  
  a5fb226c
- Added a TODO to change files and strings · 96557540
  Peter van 't Hof authored Jan 20, 2015
  
  96557540
19 Jan, 2015 1 commit
- Fix on md5 check · d7c60cc3
  Peter van 't Hof authored Jan 19, 2015
  
  d7c60cc3
16 Jan, 2015 6 commits
- Added bwa aln to mapping pipeline · bdc6999e
  Peter van 't Hof authored Jan 16, 2015
  
  bdc6999e
- AddedOutput not required · 43955884
  Peter van 't Hof authored Jan 16, 2015
  
  43955884
- Added sampe · ff81ebd3
  Peter van 't Hof authored Jan 16, 2015
  
  ff81ebd3
- Added samse · 1f867d68
  Peter van 't Hof authored Jan 16, 2015
  
  1f867d68
- Added bwa aln extension · 7bea64ef
  Peter van 't Hof authored Jan 16, 2015
  
  7bea64ef
- Make new package for bwa · 36e763df
  Peter van 't Hof authored Jan 16, 2015
  
  36e763df