Commits · 2c5d1151886e3dffaaa818bd8c844d8b21eadd07 · Mirrors / biopet.biopet

08 Oct, 2014 1 commit
- Automatic class name conversion · 2c5d1151
  Peter van 't Hof authored Oct 08, 2014
  
  2c5d1151
09 Sep, 2014 2 commits
- Fix default aligner in constructor · 849188d8
  Peter van 't Hof authored Sep 09, 2014
  
  849188d8
- Added option for metrics for each chunk · 71b12276
  Peter van 't Hof authored Sep 09, 2014
  
  71b12276
08 Sep, 2014 1 commit
- Fixed chunking output dirs · c2284b8b
  Peter van 't Hof authored Sep 08, 2014
  
  c2284b8b
01 Sep, 2014 1 commit
- Added nested class, configContains() now replaced by config.contains() · 42abd53f
  Peter van 't Hof authored Sep 01, 2014
  
  42abd53f
26 Aug, 2014 3 commits
- Replace SortSam to AddOrReplaceReadGroups for Bowtie · 0c858996
  Peter van 't Hof authored Aug 26, 2014
  
  0c858996
- Moved aligners to functions and added Bowtie · 34f65445
  Peter van 't Hof authored Aug 26, 2014
  
  34f65445
- Added defaultAligner var · 81fd15f8
  Peter van 't Hof authored Aug 26, 2014
  
  81fd15f8
25 Aug, 2014 2 commits

Peter van 't Hof authored Aug 25, 2014

Conflicts:
	flexiprep/nbactions.xml
	gatk/gatk-pipeline/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
	gatk/gatk-variantcalling/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
	mapping/examples/test.json
	mapping/nbactions.xml
	pom.xml

4557807c

Merge all maven packages into 1 · 7624b929
Peter van 't Hof authored Aug 25, 2014

7624b929