Commits · 250e63be69a5f707784162ba00b6006bc7de7ab6 · Mirrors / biopet.biopet

25 Jul, 2017 2 commits
- Fixing arguments · 250e63be
  Peter van 't Hof authored Jul 25, 2017
  
  250e63be
- Merge pull request #165 from biopet/fix-BIOPET-750 · c913b602
  Peter van 't Hof authored Jul 25, 2017
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Adding spark support for VcfStats
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  c913b602
24 Jul, 2017 12 commits
- Merge pull request #164 from biopet/fix-BIOPET-752 · dc145917
  Peter van 't Hof authored Jul 24, 2017
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Adding option to also run qiime with multiple samples at once
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  dc145917
- Merge pull request #163 from biopet/fix-BIOPET-753 · 1e8b3c2f
  Peter van 't Hof authored Jul 24, 2017
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Fixing summary in Basty
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  1e8b3c2f
- Skipping double checkChecksum jobs · 6bda10a5
  Peter van 't Hof authored Jul 24, 2017
  
  6bda10a5
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-753 · 03beb3f1
  Peter van 't Hof authored Jul 24, 2017
  
  03beb3f1
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-750 · db65e3d7
  Peter van 't Hof authored Jul 24, 2017
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# Conflicts:
#	biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
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  db65e3d7
- Merge remote-tracking branch 'remotes/origin/fix-BIOPET-750' into fix-BIOPET-750 · 5c5ae1cd
  Peter van 't Hof authored Jul 24, 2017
  
  5c5ae1cd
- Merge pull request #162 from biopet/fix-BIOPET-745 · 5d3b5448
  Peter van 't Hof authored Jul 24, 2017
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Fixing some failing tests
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  5d3b5448
- Merge pull request #148 from biopet/fix-BIOPET-732 · d452d397
  Peter van 't Hof authored Jul 24, 2017
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Fix fastq sync prefixes
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  d452d397
- Make it possible to disable gubbins · afa1608d
  Peter van 't Hof authored Jul 24, 2017
  
  afa1608d
- Changing name blah ;) · e32832d3
  Peter van 't Hof authored Jul 24, 2017
  
  e32832d3
- Typos · 1c4febed
  Peter van 't Hof authored Jul 24, 2017
  
  1c4febed
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-750 · 28db4a1e
  Peter van 't Hof authored Jul 24, 2017
  
  28db4a1e
21 Jul, 2017 7 commits
- Added shiva report to Basty · 9c297111
  Peter van 't Hof authored Jul 21, 2017
  
  9c297111
- Fixed path in stats.json · e70a3c2e
  Peter van 't Hof authored Jul 21, 2017
  
  e70a3c2e
- Merge pull request #159 from biopet/fix-BIOPET-736-peter · 9b83c7aa
  Peter van 't Hof authored Jul 21, 2017
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Adding documentation for mutect2
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  9b83c7aa
- Adding option to also run qiime with multiple samples at once · 8c0431ee
  Peter van 't Hof authored Jul 21, 2017
  
  8c0431ee
- Fixing summary in Basty · d7ef6f44
  Peter van 't Hof authored Jul 21, 2017
  
  d7ef6f44
- Fixing duplicate metrics · 2ca6260e
  Peter van 't Hof authored Jul 21, 2017
  
  2ca6260e
- Fix text comments · 56a3c8ad
  Peter van 't Hof authored Jul 21, 2017
  
  56a3c8ad
20 Jul, 2017 1 commit
- Fixing tests · 3b61a8de
  Peter van 't Hof authored Jul 20, 2017
  
  3b61a8de
19 Jul, 2017 3 commits
- Move contigs stats to spark logic · 73754420
  Peter van 't Hof authored Jul 19, 2017
  
  73754420
- Move methods to stats object · 6bad5603
  Peter van 't Hof authored Jul 19, 2017
  
  6bad5603
- Removed contigs storage in Stats class · b9a359c2
  Peter van 't Hof authored Jul 19, 2017
  
  b9a359c2
18 Jul, 2017 15 commits
- Adding some more information · 97d831f3
  Peter van 't Hof authored Jul 18, 2017
  
  97d831f3
- Fix compile issue · cc2aa04f
  Peter van 't Hof authored Jul 18, 2017
  
  cc2aa04f
- Typos · b0e3e032
  Peter van 't Hof authored Jul 18, 2017
  
  b0e3e032
- Fixing PR comments · 702b9276
  Peter van 't Hof authored Jul 18, 2017
  
  702b9276
- Fixed tests · 0d184280
  Peter van 't Hof authored Jul 18, 2017
  
  0d184280
- Remove old version and replace by the spark version · 2fd247f5
  Peter van 't Hof authored Jul 18, 2017
  
  2fd247f5
- Adding option to limit number of bins in 1 job · 7d053e65
  Peter van 't Hof authored Jul 18, 2017
  
  7d053e65
- Adding optional properties file for biopet · c5d042c6
  Peter van 't Hof authored Jul 18, 2017
  
  c5d042c6
- Only open file once per method call · 4d76382d
  Peter van 't Hof authored Jul 18, 2017
  
  4d76382d
- Fix compile errors · ba3725c3
  Peter van 't Hof authored Jul 18, 2017
  
  ba3725c3
- Fix compile errors · 3835e14b
  Peter van 't Hof authored Jul 18, 2017
  
  3835e14b
- Remove local jar for testing · 8f9236a6
  Peter van 't Hof authored Jul 18, 2017
  
  8f9236a6
- Switch to output classes for Arg parsing · e82756e6
  Peter van 't Hof authored Jul 18, 2017
  
  e82756e6
- Fix style · 29b937d4
  Peter van 't Hof authored Jul 18, 2017
  
  29b937d4
- Removing out commented code · c1c70187
  Peter van 't Hof authored Jul 18, 2017
  
  c1c70187